YRC Public Data Repository - Protein Structure Prediction

Protein:	ENGB_PASMU
Organism:	Pasteurella multocida
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ENGB_PASMU.

Description	E-value	Query Range	Subject Range
ENGB_HAEIN - Probable GTP-binding protein engB OS=Haemophilus influenzae GN=engB PE=3 SV=1 ENGB_HAEIN - Probable GTP-binding protein EngB OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / ... gi\|144984498 - gi\|144984498\|gb\|EDJ91921.1\| GTP-binding protein [Haemophilus influenzae R3021] ENGB_HAEIG - Probable GTP-binding protein EngB OS=Haemophilus influenzae (strain PittGG) GN=engB PE=3 SV=1 gi\|145630217 - gi\|145630217\|ref\|ZP_01785999.1\| GTP-binding protein [Haemophilus influenzae 22.4-21]	149.0	[0..1]	[205..1]
gi\|46133299 - gi\|46133299\|ref\|ZP_00156960.2\| COG0218: Predicted GTPase [Haemophilus influenzae R2866]	149.0	[0..1]	[201..1]
ENGB_HAEI8 - Probable GTP-binding protein EngB OS=Haemophilus influenzae (strain 86-028NP) GN=engB PE=3 SV=1	149.0	[0..1]	[201..1]
IF2_CLOPH - Translation initiation factor IF-2 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ...	149.0	[0..2]	[196..607]
ENGB_HAEIE - Probable GTP-binding protein EngB OS=Haemophilus influenzae (strain PittEE) GN=engB PE=3 SV=1 gi\|46129021 - gi\|46129021\|ref\|ZP_00155618.2\| COG0218: Predicted GTPase [Haemophilus influenzae R2846]	148.0	[0..1]	[201..1]
ENGB_MANSM - Probable GTP-binding protein EngB OS=Mannheimia succiniciproducens (strain MBEL55E) GN=engB PE=3 SV=...	148.0	[0..1]	[205..1]
gi\|87125352, gi\|... - gi\|87125352\|ref\|ZP_01081198.1\| translation initiation factor [Synechococcus sp. RS9917], gi\|86167121...	147.0	[0..2]	[196..572]
EFTU_STIAU - Elongation factor Tu OS=Stigmatella aurantiaca GN=tuf PE=3 SV=2	147.0	[0..1]	[204..1]
gi\|115366877, gi... - gi\|115378468\|ref\|ZP_01465627.1\| translation elongation factor Tu [Stigmatella aurantiaca DW4/3-1], g...	145.0	[0..1]	[204..1]
gi\|113460478, gi... - gi\|113460478\|ref\|YP_718540.1\| GTPase EngB [Haemophilus somnus 129PT], gi\|112822521\|gb\|ABI24610.1\| ce...	145.0	[0..1]	[201..28]

Back

Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIKLNYHK THFLTSAPDI RALPEDSGIE IAFAGRSNAG KSTALNALTN QKSLARTSKT  60
   61 PGRTQLINLF EVEPQCRLVD LPGYGYAAVP EQMKIQWQKA LGEYLQKRQC LAGVVILMDI 120
  121 RHPLKDLDQQ MIEWAVASEL PVLLLLTKAD KLSQSARSKQ VKMVREAILP FQGDVQVEAF 180
  181 SALNKTGIDR LAAKLDSWFA PVLSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.09691
Match:	1puiA
Description:	Probable GTPase EngB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits