YRC Public Data Repository - Protein Structure Prediction

Protein:	EMB1_DAUCA
Organism:	Daucus carota
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EMB1_DAUCA.

Description	E-value	Query Range	Subject Range
gi\|226555 - gi\|226555\|prf\|\|1601521E Lea D-19 gene gi\|167381 - gi\|167381\|gb\|AAA92729.1\| storage protein	128.0	[0..2]	[92..12]
gi\|89275331 - gi\|89275331\|gb\|ABD66069.1\| EMZ08 [Elaeis guineensis]	107.0	[0..1]	[90..1]
gi\|1754979 - gi\|1754979\|gb\|AAB39474.1\| Em protein	106.0	[0..2]	[90..3]
gi\|1345529 - gi\|1345529\|emb\|CAA54402.1\| gB19.1b [Hordeum vulgare subsp. vulgare] LE19B_HORVU - Late embryogenesis abundant protein B19.1B OS=Hordeum vulgare GN=B19.1B PE=3 SV=1	106.0	[0..2]	[91..3]
gi\|7442250, gi\|1... - pir\|\|T10839 embryonic abundant protein Em (clone emvigna2) - mung bean, gi\|1141784\|gb\|AAB07225.1\| E...	106.0	[0..2]	[90..3]
gi\|7594645 - gi\|7594645\|emb\|CAB88096.1\| Early-methionine-labelled polypeptide [Secale cereale]	105.0	[0..2]	[91..3]
EM1_WHEAT - Em protein OS=Triticum aestivum GN=EM PE=2 SV=1	105.0	[0..2]	[91..3]
gi\|2270988, gi\|1... - pir\|\|T07087 embryonic abundant protein - soybean, gi\|2270988\|gb\|AAB71224.1\| Em protein [Glycine max]...	105.0	[0..2]	[90..3]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQQEKKEL DARARQGETV VPGGTGGKSL EAQQHLAEGR SKGGQTRKEQ LGGEGYHEMG  60
   61 RKGGLSNNDM SGGERAEQEG IDIDESKFRT KK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	56.356547
Match:	PF00477.8
Description:	No description for PF00477.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.413	N/A	N/A	c.58.1	Aminoacid dehydrogenase-like, N-terminal domain
View	Download	0.240	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.237	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits