YRC Public Data Repository - Protein Structure Prediction

Protein:	EM3_WHEAT
Organism:	Triticum aestivum
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EM3_WHEAT.

Description	E-value	Query Range	Subject Range
gi\|226555 - gi\|226555\|prf\|\|1601521E Lea D-19 gene gi\|167381 - gi\|167381\|gb\|AAA92729.1\| storage protein	127.0	[0..5]	[92..14]
gi\|1345529 - gi\|1345529\|emb\|CAA54402.1\| gB19.1b [Hordeum vulgare subsp. vulgare] LE19B_HORVU - Late embryogenesis abundant protein B19.1B OS=Hordeum vulgare GN=B19.1B PE=3 SV=1	113.0	[0..1]	[93..1]
gi\|1754979 - gi\|1754979\|gb\|AAB39474.1\| Em protein	112.0	[0..1]	[93..1]
gi\|7594645 - gi\|7594645\|emb\|CAB88096.1\| Early-methionine-labelled polypeptide [Secale cereale]	112.0	[0..1]	[93..1]
EM1_WHEAT - Em protein OS=Triticum aestivum GN=EM PE=2 SV=1	111.0	[0..1]	[93..1]
gi\|2270988, gi\|1... - pir\|\|T07087 embryonic abundant protein - soybean, gi\|2270988\|gb\|AAB71224.1\| Em protein [Glycine max]...	111.0	[0..1]	[93..1]
gi\|7442250, gi\|1... - pir\|\|T10839 embryonic abundant protein Em (clone emvigna2) - mung bean, gi\|1141784\|gb\|AAB07225.1\| E...	111.0	[0..1]	[93..1]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGQQERSQ LDRKAREGET VVPGGTGGKS LEAHENLAEG RSRGGQTRRE QMGEEGYSEM  60
   61 GRKGGLSTND ESGGERAARE GIDIDESKFK TKS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	57.0
Match:	PF00477.8
Description:	No description for PF00477.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits