YRC Public Data Repository - Protein Structure Prediction

Protein:	ECPD_ECOLI
Organism:	Escherichia coli
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ECPD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|74310761, gi\|... - gi\|74310761\|ref\|YP_309180.1\| putative chaperone protein EcpD [Shigella sonnei Ss046], gi\|73854238\|gb...	276.0	[0..1]	[246..1]
gi\|81244149, gi\|... - gi\|82542738\|ref\|YP_406685.1\| putative chaperone protein EcpD [Shigella boydii Sb227], gi\|81244149\|gb...	276.0	[0..1]	[246..1]
gi\|385211 - gi\|385211\|gb\|AAA23720.1\| periplasmic protein [Escherichia coli]	275.0	[0..1]	[246..1]
gi\|26106479, gi\|... - gi\|26246082\|ref\|NP_752121.1\| putative chaperone protein EcpD [Escherichia coli CFT073], gi\|26106479\|... gi\|91070783, gi\|... - gi\|91209209\|ref\|YP_539195.1\| putative chaperone protein EcpD [Escherichia coli UTI89], gi\|91070783\|g... gi\|218425581, gi... - gi\|218688017\|ref\|YP_002396229.1\| putative chaperone protein EcpD [Escherichia coli ED1a], gi\|2184255... gi\|237704297, gi... - gi\|237704297\|ref\|ZP_04534778.1\| periplasmic chaperone EcpD [Escherichia sp. 3_2_53FAA], gi\|226902209... gi\|117622427, gi... - gi\|117622427\|ref\|YP_851340.1\| putative chaperone protein EcpD [Escherichia coli APEC O1], gi\|1155115... gi\|218557083, gi... - gi\|218557083\|ref\|YP_002389996.1\| putative chaperone protein EcpD [Escherichia coli S88], gi\|21836385...	266.0	[0..1]	[246..1]
gi\|191172798, gi... - gi\|191172798\|ref\|ZP_03034335.1\| gram-negative pili assembly chaperone [Escherichia coli F11], gi\|190... gi\|110640361, gi... - gi\|110640361\|ref\|YP_668089.1\| putative chaperone protein EcpD [Escherichia coli 536], gi\|110341953\|g...	266.0	[0..1]	[246..1]
gi\|113530526, gi... - gi\|116696027\|ref\|YP_841603.1\| fimbrial assembly chaperone [Ralstonia eutropha H16], gi\|113530526\|emb...	260.0	[0..1]	[246..1]
gi\|75512016 - gi\|75512016\|ref\|ZP_00734611.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli 5...	258.0	[0..17]	[246..1]
gi\|83585457 - gi\|83585457\|ref\|ZP_00924102.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli 1... gi\|83569721 - gi\|83569721\|ref\|ZP_00921171.1\| COG3121: P pilus assembly protein, chaperone PapD [Shigella dysenteri... gi\|75238845 - gi\|75238845\|ref\|ZP_00722827.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli E... gi\|75230497 - gi\|75230497\|ref\|ZP_00716978.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli B... gi\|75210465 - gi\|75210465\|ref\|ZP_00710616.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli B... gi\|75194352 - gi\|75194352\|ref\|ZP_00704422.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli H... gi\|75189237 - gi\|75189237\|ref\|ZP_00702504.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli E...	257.0	[0..17]	[246..1]
gi\|75258869 - gi\|75258869\|ref\|ZP_00730259.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli E...	254.0	[0..17]	[246..1]
gi\|188014581, gi... - gi\|188014581\|gb\|EDU52703.1\| gram-negative pili assembly chaperone [Escherichia coli O157:H7 str. EC4... gi\|189357090, gi... - gi\|189357090\|gb\|EDU75509.1\| chaperone protein EcpD [Escherichia coli O157:H7 str. EC4401], gi\|168755... gi\|189365330, gi... - gi\|189365330\|gb\|EDU83746.1\| gram-negative pili assembly chaperone [Escherichia coli O157:H7 str. EC4... gi\|209396894, gi... - gi\|209396894\|ref\|YP_002268749.1\| pili assembly chaperone [Escherichia coli O157:H7 str. EC4115], gi\|... gi\|217325911, gi... - gi\|217325911\|ref\|ZP_03441995.1\| pili assembly chaperone [Escherichia coli O157:H7 str. TW14588], gi\|... gi\|25299286 - pir\|\|H90646 probable pilin chaperone [imported] - Escherichia coli (strain O157:H7, substrain RIMD ... gi\|189376390, gi... - gi\|189376390\|gb\|EDU94806.1\| chaperone protein EcpD [Escherichia coli O157:H7 str. EC508], gi\|1688014... gi\|15829398, gi\|... - gi\|15829398\|ref\|NP_308171.1\| putative pilin chaperone [Escherichia coli O157:H7], gi\|13359600\|dbj\|BA... gi\|195938178 - gi\|195938178\|ref\|ZP_03083560.1\| putative chaperone protein EcpD [Escherichia coli O157:H7 str. EC402... gi\|15829398, gi\|... - gi\|15829398\|ref\|NP_308171.1\| putative chaperone protein EcpD [Escherichia coli O157:H7 str. Sakai], ... gi\|208725539, gi... - gi\|208805738\|ref\|ZP_03248075.1\| gram-negative pili assembly chaperone [Escherichia coli O157:H7 str.... gi\|208813822, gi... - gi\|208813822\|ref\|ZP_03255151.1\| gram-negative pili assembly chaperone [Escherichia coli O157:H7 str.... gi\|189360663, gi... - gi\|189360663\|gb\|EDU79082.1\| gram-negative pili assembly chaperone [Escherichia coli O157:H7 str. EC4... gi\|254791275, gi... - gi\|254791275\|ref\|YP_003076112.1\| fimbrial chaperone protein [Escherichia coli O157:H7 str. TW14359],... gi\|187767818, gi... - gi\|187767818\|gb\|EDU31662.1\| gram-negative pili assembly chaperone [Escherichia coli O157:H7 str. EC4... gi\|168782031, gi... - gi\|189000461\|gb\|EDU69447.1\| gram-negative pili assembly chaperone [Escherichia coli O157:H7 str. EC4... gi\|189371086, gi... - gi\|189371086\|gb\|EDU89502.1\| gram-negative pili assembly chaperone [Escherichia coli O157:H7 str. EC8...	252.0	[0..1]	[245..1]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFNTKHTTA LCFVTCMAFS SSSIADIVIS GTRVIYKSDQ KSVNVRLENK GNNPLLVQSW  60
   61 LDTGDDNAEP GSITVPFTAT PPVSRIDAKR GQTIKLMYTA STSLPKDRES VFWFNVLEVP 120
  121 PKPDAEKVAN QSLLQLAFRT RIKLFYRPDG LKGNPSEAPL ALKWFWSGSE GKASLRVTNP 180
  181 TPYYVSFSSG DLEASGKRYP IDVKMIAPFS DEVMKVNGLN GKANSAKVHF YAINDFGGAI 240
  241 EGNARL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	1l4iA
Description:	Periplasmic chaperone SfaE; SfaE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.40357083304367	bayes_pls_golite062009
protein binding	1.19650199611166	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: