YRC Public Data Repository - Protein Structure Prediction

Protein:	ECLH_BOMMO
Organism:	Bombyx mori
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ECLH_BOMMO.

Description	E-value	Query Range	Subject Range
ECLH_MANSE - Eclosion hormone OS=Manduca sexta PE=1 SV=2	129.0	[0..1]	[88..1]
gi\|55979134 - gi\|55979134\|gb\|AAV69026.1\| eclosion hormone precursor [Helicoverpa armigera]	128.0	[0..1]	[88..1]
gi\|108872486, gi... - gi\|157128758\|ref\|XP_001661508.1\| eclosion hormone, putative [Aedes aegypti], gi\|108872486\|gb\|EAT3671...	122.0	[0..4]	[88..5]
AGAP010437-PA - ECH: eclosion hormone\|protein_coding\|3L:3546075:3546412:-1\|gene:AGAP010437 gi\|118781508, gi... - gi\|118781508\|ref\|XP_001230805.1\| eclosion hormone (AGAP010437-PA) [Anopheles gambiae str. PEST], gi\|...	118.0	[0..1]	[88..1]
gi\|110295235 - gi\|110295235\|gb\|ABG66962.1\| eclosion hormone precursor [Ostrinia furnacalis]	116.0	[0..1]	[88..1]
gi\|208239 - gi\|208239\|gb\|AAA72999.1\| eclosion hormone	105.0	[0..24]	[88..15]
gi\|194102024, gi... - gi\|195144194\|ref\|XP_002013081.1\| GL23932 [Drosophila persimilis], gi\|194102024\|gb\|EDW24067.1\| GL2393... gi\|54638062, gi\|... - gi\|54638062\|gb\|EAL27464.1\| GA18853 [Drosophila pseudoobscura pseudoobscura], gi\|125774135\|ref\|XP_001... gi\|54638062\|gb\|E... - GA18853-PA [Drosophila pseudoobscura], GA18853 [Drosophila pseudoobscura pseudoobscura]	101.0	[0..8]	[88..6]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANKLTAVIV VALAVAFMVN LDYANCSPAI ASSYDAMEIC IENCAQCKKM FGPWFEGSLC  60
   61 AESCIKARGK DIPECESFAS ISPFLNKL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	49.920819
Match:	PF04736.3
Description:	No description for PF04736.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits