YRC Public Data Repository - Protein Structure Prediction

Protein:	DSBB_YERPE
Organism:	Yersinia pestis
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DSBB_YERPE.

Description	E-value	Query Range	Subject Range
gi\|167049118, gi... - gi\|167401422\|ref\|ZP_02306919.1\| disulfide bond formation protein DsbB [Yersinia pestis biovar Antiqu... gi\|21959020, gi\|... - gi\|22126066\|ref\|NP_669489.1\| disulfide bond formation protein B [Yersinia pestis KIM], gi\|21959020\|g... gi\|45441745, gi\|... - gi\|45441745\|ref\|NP_993284.1\| disulfide bond formation protein B [Yersinia pestis biovar Microtus str...	5.0E-45	[1..176]	[17..192]
gi\|145209983, gi... - gi\|145598287\|ref\|YP_001162363.1\| disulfide bond formation protein B [Yersinia pestis Pestoides F], g... gi\|162418534, gi... - gi\|77634461\|ref\|ZP_00796561.1\| COG1495: Disulfide bond formation protein DsbB [Yersinia pestis Angol... gi\|166208217, gi... - gi\|166211037\|ref\|ZP_02237072.1\| disulfide bond formation protein DsbB [Yersinia pestis biovar Antiqu... gi\|167420037, gi... - gi\|167420037\|ref\|ZP_02311790.1\| disulfide bond formation protein DsbB [Yersinia pestis biovar Orient... gi\|152958494, gi... - gi\|77629153\|ref\|ZP_00791739.1\| COG1495: Disulfide bond formation protein DsbB [Yersinia pseudotuberc... gi\|165927701, gi... - gi\|165927701\|ref\|ZP_02223533.1\| disulfide bond formation protein DsbB [Yersinia pestis biovar Orient... gi\|165991865, gi... - gi\|166009310\|ref\|ZP_02230208.1\| disulfide bond formation protein DsbB [Yersinia pestis biovar Antiqu... gi\|167426569, gi... - gi\|167426569\|ref\|ZP_02318322.1\| disulfide bond formation protein DsbB [Yersinia pestis biovar Mediae... gi\|108811773, gi... - gi\|108811773\|ref\|YP_647540.1\| disulfide bond formation protein B [Yersinia pestis Nepal516], gi\|1087... gi\|108807497, gi... - gi\|108807497\|ref\|YP_651413.1\| disulfide bond formation protein B [Yersinia pestis Antiqua], gi\|10877... gi\|89104356, gi\|... - gi\|89104356\|ref\|ZP_01176901.1\| COG1495: Disulfide bond formation protein DsbB [Yersinia pestis biova...	6.0E-45	[1..176]	[6..181]
DSBB_ECOK1 - Disulfide bond formation protein B OS=Escherichia coli O1:K1 / APEC GN=dsbB PE=3 SV=2 gi\|218364878, gi... - gi\|218558109\|ref\|YP_002391022.1\| disulfide bond formation protein B [Escherichia coli S88], gi\|21836... gi\|215264485, gi... - gi\|215486413\|ref\|YP_002328844.1\| disulfide bond formation protein B [Escherichia coli O127:H6 str. E... DSBB_ECOL6 - Disulfide bond formation protein B OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN... DSBB_ECOL6 - Disulfide bond formation protein B OS=Escherichia coli O6 GN=dsbB PE=3 SV=1 DSBB_ECOUT - Disulfide bond formation protein B OS=Escherichia coli (strain UTI89 / UPEC) GN=dsbB PE=3 SV=2	1.0E-43	[1..176]	[1..176]
gi\|190908699, gi... - gi\|191170967\|ref\|ZP_03032518.1\| disulfide bond formation protein DsbB [Escherichia coli F11], gi\|190... DSBB_ECOL5 - Disulfide bond formation protein B OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=dsbB PE=3 S...	1.0E-43	[1..176]	[1..176]
gi\|161363049, gi... - gi\|161613685\|ref\|YP_001587650.1\| disulfide bond formation protein B [Salmonella enterica subsp. ente... gi\|205339237, gi... - gi\|205339237\|gb\|EDZ26001.1\| oxido-reductase [Salmonella enterica subsp. enterica serovar Heidelberg ... gi\|168233852, gi... - gi\|205332134\|gb\|EDZ18898.1\| oxido-reductase [Salmonella enterica subsp. enterica serovar Kentucky st... gi\|167993258, gi... - gi\|205328694\|gb\|EDZ15458.1\| oxido-reductase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:... gi\|205321607, gi... - gi\|205321607\|gb\|EDZ09446.1\| oxido-reductase [Salmonella enterica subsp. enterica serovar Saintpaul s... DSBB_SALTY - Disulfide bond formation protein B OS=Salmonella typhimurium GN=dsbB PE=3 SV=1 DSBB_SALTY - Disulfide bond formation protein B OS=Salmonella typhimurium GN=dsbB PE=3 SV=1 DSBB_SALTI - Disulfide bond formation protein B OS=Salmonella typhi GN=dsbB PE=3 SV=1 gi\|205272308, gi... - gi\|205352527\|ref\|YP_002226328.1\| disulfide bond formation protein B [Salmonella enterica subsp. ente... gi\|200389570, gi... - gi\|200389570\|ref\|ZP_03216181.1\| oxido-reductase [Salmonella enterica subsp. enterica serovar Virchow... DSBB_SALCH - Disulfide bond formation protein B OS=Salmonella choleraesuis (strain SC-B67) GN=dsbB PE=3 SV=1 gi\|198241963, gi... - gi\|198241963\|ref\|YP_002215334.1\| oxido-reductase [Salmonella enterica subsp. enterica serovar Dublin... DSBB_SALPA - Disulfide bond formation protein B OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=dsbB PE=... gi\|197093676, gi... - gi\|197362199\|ref\|YP_002141836.1\| disulfide bond formation protein B [Salmonella enterica subsp. ente... DSBB_SALTI - Disulfide bond formation protein B OS=Salmonella typhi GN=dsbB PE=3 SV=1 gi\|213646773 - gi\|213646773\|ref\|ZP_03376826.1\| disulfide bond formation protein B [Salmonella enterica subsp. enter... DSBB_SALTY - Disulfide bond formation protein B OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) G... gi\|213426619 - gi\|213426619\|ref\|ZP_03359369.1\| disulfide bond formation protein B [Salmonella enterica subsp. enter... gi\|213052605 - gi\|213052605\|ref\|ZP_03345483.1\| disulfide bond formation protein B [Salmonella enterica subsp. enter... gi\|207856686, gi... - gi\|207856686\|ref\|YP_002243337.1\| disulfide bond formation protein B [Salmonella enterica subsp. ente... gi\|194401073, gi... - gi\|194442410\|ref\|YP_002041063.1\| oxido-reductase [Salmonella enterica subsp. enterica serovar Newpor... gi\|205342661, gi... - gi\|205342661\|gb\|EDZ29425.1\| oxido-reductase [Salmonella enterica subsp. enterica serovar Weltevreden... gi\|29141545, gi\|... - gi\|29141545\|ref\|NP_804887.1\| disulfide bond formation protein B [Salmonella enterica subsp. enterica... gi\|168462702, gi... - gi\|195634093\|gb\|EDX52445.1\| oxido-reductase [Salmonella enterica subsp. enterica serovar Newport str... gi\|16760697 - gi\|16760697\|ref\|NP_456314.1\| disulfide bond formation protein B [Salmonella enterica subsp. enterica... gi\|205351289, gi... - gi\|205351289\|gb\|EDZ37920.1\| oxido-reductase [Salmonella enterica subsp. enterica serovar Hadar str. ... gi\|197262668, gi... - gi\|197262668\|ref\|ZP_03162742.1\| oxido-reductase [Salmonella enterica subsp. enterica serovar Saintpa... gi\|197251350, gi... - gi\|197251350\|ref\|YP_002146217.1\| oxido-reductase [Salmonella enterica subsp. enterica serovar Agona ... gi\|194469286, gi... - gi\|194469286\|ref\|ZP_03075270.1\| oxido-reductase [Salmonella enterica subsp. enterica serovar Kentuck... gi\|194409883, gi... - gi\|194451579\|ref\|YP_002045852.1\| disulfide bond formation protein B [Salmonella enterica subsp. ente... DSBB_SALCH - Disulfide bond formation protein B OS=Salmonella choleraesuis GN=dsbB PE=3 SV=1 DSBB_SALPA - Disulfide bond formation protein B OS=Salmonella paratyphi A GN=dsbB PE=3 SV=1 DSBB_SALCH - Disulfide bond formation protein B OS=Salmonella choleraesuis GN=dsbB PE=3 SV=1 lcl\|NC_016856.1_... - [gene=dsbB] [protein=disulfide bond formation protein B] [protein_id=YP_005237743.1] [location=19192... gi\|224583702, gi... - gi\|224583702\|ref\|YP_002637500.1\| disulfide bond formation protein B [Salmonella enterica subsp. ente... gi\|214002617 - gi\|214002617\|ref\|ZP_03413352.1\| disulfide bond formation protein B [Salmonella enterica subsp. enter... gi\|213857608 - gi\|213857608\|ref\|ZP_03384579.1\| disulfide bond formation protein B [Salmonella enterica subsp. enter... gi\|238912129 - gi\|238912129\|ref\|ZP_04655966.1\| disulfide bond formation protein B [Salmonella enterica subsp. enter...	1.0E-43	[1..176]	[1..176]
gi\|194423929, gi... - gi\|194436946\|ref\|ZP_03069045.1\| disulfide bond formation protein DsbB [Escherichia coli 101-1], gi\|1... gi\|194411232, gi... - gi\|194430724\|ref\|ZP_03063149.1\| disulfide bond formation protein DsbB [Escherichia coli B171], gi\|19... gi\|193071179, gi... - gi\|193071179\|ref\|ZP_03052102.1\| disulfide bond formation protein DsbB [Escherichia coli E110019], gi... gi\|89108030, gi\|... - gi\|89108030\|ref\|AP_001810.1\| oxidoreductase that catalyzes reoxidation of DsbA protein disulfide iso... gi\|170517679, gi... - gi\|170679961\|ref\|YP_001744016.1\| disulfide bond formation protein DsbB [Escherichia coli SMS-3-5], g... DSBB_SHIDS - Disulfide bond formation protein B OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dsbB PE=3 SV... gi\|218431797, gi... - gi\|218704700\|ref\|YP_002412219.1\| disulfide bond formation protein B [Escherichia coli UMN026], gi\|21... gi\|218351431, gi... - gi\|218694699\|ref\|YP_002402366.1\| disulfide bond formation protein B [Escherichia coli 55989], gi\|218... gi\|218360508, gi... - gi\|218553740\|ref\|YP_002386653.1\| disulfide bond formation protein B [Escherichia coli IAI1], gi\|2183... gi\|195938840 - gi\|195938840\|ref\|ZP_03084222.1\| disulfide bond formation protein B [Escherichia coli O157:H7 str. EC... gi\|168771076, gi... - gi\|189360078\|gb\|EDU78497.1\| disulfide bond formation protein DsbB [Escherichia coli O157:H7 str. EC4... DSBB_ECO57 - Disulfide bond formation protein B OS=Escherichia coli O157:H7 GN=dsbB PE=3 SV=1 gi\|189356325, gi... - gi\|189356325\|gb\|EDU74744.1\| disulfide bond formation protein DsbB [Escherichia coli O157:H7 str. EC4... gi\|170080813, gi... - gi\|170080813\|ref\|YP_001730133.1\| oxidoreductase that catalyzes reoxidation of DsbA protein disulfide... gi\|170020447, gi... - gi\|170020447\|ref\|YP_001725401.1\| disulfide bond formation protein B [Escherichia coli ATCC 8739], gi... EG11393 - oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I / Disulfide oxidored... gi\|189372462, gi... - gi\|189372462\|gb\|EDU90878.1\| disulfide bond formation protein DsbB [Escherichia coli O157:H7 str. EC8... gi\|189000025, gi... - gi\|189000025\|gb\|EDU69011.1\| disulfide bond formation protein DsbB [Escherichia coli O157:H7 str. EC4... gi\|124498072, gi... - gi\|124532287\|ref\|ZP_01702181.1\| Disulphide bond formation protein DsbB [Escherichia coli B], gi\|1244... gi\|157160688, gi... - gi\|157160688\|ref\|YP_001458006.1\| disulfide bond formation protein B [Escherichia coli HS], gi\|157066... EG11393 - oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I / Disulfide oxidored... gi\|15830934, gi\|... - gi\|15830934\|ref\|NP_309707.1\| disulfide bond formation protein B [Escherichia coli O157:H7 str. Sakai... DSBB_ECOLI - Disulfide bond formation protein B (Disulfide oxidoreductase) - Escherichia coli gi\|251784692, gi... - gi\|251784692\|ref\|YP_002998996.1\| hypothetical protein B21_01170 [Escherichia coli BL21], gi\|24237696... gi\|238900416, gi... - gi\|238900416\|ref\|YP_002926212.1\| oxidoreductase that catalyzes reoxidation of DsbA protein disulfide... gi\|253973168, gi... - gi\|254161267\|ref\|YP_003044375.1\| disulfide bond formation protein B [Escherichia coli B str. REL606]... gi\|253977382, gi... - gi\|254288075\|ref\|YP_003053823.1\| disulfide bond formation protein B [Escherichia coli BL21(DE3)], gi... gi\|254592062, gi... - gi\|254792662\|ref\|YP_003077499.1\| oxidoreductase that catalyzes reoxidation of DsbA protein disulfide...	1.0E-43	[1..176]	[1..176]
DSBB_SHIFL - Disulfide bond formation protein B OS=Shigella flexneri GN=dsbB PE=3 SV=2 gi\|56383392, gi\|... - gi\|56479841\|ref\|NP_707082.2\| disulfide bond formation protein B [Shigella flexneri 2a str. 301], gi\|... gi\|191168526, gi... - gi\|191168526\|ref\|ZP_03030312.1\| disulfide bond formation protein DsbB [Escherichia coli B7A], gi\|190... gi\|30040950, gi\|... - gi\|30062702\|ref\|NP_836873.1\| disulfide bond formation protein B [Shigella flexneri 2a str. 2457T], g... gi\|188494784, gi... - gi\|188494784\|ref\|ZP_03002054.1\| disulfide bond formation protein DsbB [Escherichia coli 53638], gi\|1... DSBB_SHIF8 - Disulfide bond formation protein B OS=Shigella flexneri serotype 5b (strain 8401) GN=dsbB PE=3 SV=1	2.0E-43	[1..176]	[1..176]
gi\|91071972, gi\|... - gi\|91210398\|ref\|YP_540384.1\| disulfide bond formation protein B [Escherichia coli UTI89], gi\|9107197... gi\|226899897, gi... - gi\|237705140\|ref\|ZP_04535621.1\| disulfide bond formation protein B [Escherichia sp. 3_2_53FAA], gi\|2... gi\|117623399, gi... - gi\|117623399\|ref\|YP_852312.1\| disulfide bond formation protein B [Escherichia coli APEC O1], gi\|1155... gi\|227886402, gi... - gi\|227886402\|ref\|ZP_04004207.1\| disulfide bond formation protein B [Escherichia coli 83972], gi\|2278... gi\|26247498, gi\|... - gi\|26247498\|ref\|NP_753538.1\| disulfide bond formation protein B [Escherichia coli CFT073], gi\|261078...	2.0E-43	[1..176]	[3..178]
DSBB_SHISS - Disulfide bond formation protein B OS=Shigella sonnei (strain Ss046) GN=dsbB PE=3 SV=1 DSBB_SHIBS - Disulfide bond formation protein B OS=Shigella boydii serotype 4 (strain Sb227) GN=dsbB PE=3 SV=1 gi\|187730826, gi... - gi\|187730826\|ref\|YP_001879966.1\| disulfide bond formation protein DsbB [Shigella boydii CDC 3083-94]...	2.0E-43	[1..176]	[1..176]
gi\|25285423 - gi\|25285423\|pir\|\|H85696 hypothetical protein dsbB [imported] - Escherichia coli (strain O157:H7, su... gi\|12514882, gi\|... - gi\|15801407\|ref\|NP_287424.1\| disulfide bond formation protein B [Escherichia coli O157:H7 EDL933], g...	2.0E-43	[1..176]	[1..176]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQFLNRCSR GRGAWLLMAL TAFLLELTAL YFQHIMLLQP CVMCIYERVA LFGILGASLL  60
   61 GAIAPRSPLR YLAIAVWIYS AWKGVQLAWA HTMLQLNPSP FNTCDFFVNF PSWLPLDKWL 120
  121 PAVFAASGDC SERQWQFMSL EMPQWLVGIF AAYLVIAVLV LISQFVKPKR RDLFGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.30103
Match:	2hi7B
Description:	No description for 2hi7B was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.015349122465922	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: