YRC Public Data Repository - Protein Structure Prediction

Protein:	DP3A_ECOLI, DPO3...
Organism:	Escherichia coli
Length:	1160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DP3A_ECOLI, DPO3....

Description	E-value	Query Range	Subject Range
gi\|209745712, gi... - pir\|\|B85503 DNA polymerase III, alpha subunit [imported] - Escherichia coli (strain O157:H7, substra... gi\|15799866, gi\|... - gi\|15799866\|ref\|NP_285878.1\| DNA polymerase III subunit alpha [Escherichia coli O157:H7 EDL933], gi\|... DPO3A_ECO57 - DNA polymerase III subunit alpha OS=Escherichia coli O157:H7 GN=dnaE PE=3 SV=1 gi\|13359642, gi\|... - gi\|15829440\|ref\|NP_308213.1\| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str. Sakai],... gi\|217326041, gi... - gi\|217326041\|ref\|ZP_03442125.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. TW1... gi\|209159877, gi... - gi\|209398477\|ref\|YP_002268792.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC... gi\|208820436, gi... - gi\|208820436\|ref\|ZP_03260756.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4... gi\|208734037, gi... - gi\|208812760\|ref\|ZP_03254089.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4... gi\|168782076, gi... - gi\|189000426\|gb\|EDU69412.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4076]... gi\|187767109, gi... - gi\|187767109\|gb\|EDU30953.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4196]... gi\|189361079, gi... - gi\|189361079\|gb\|EDU79498.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4486]... gi\|168764953, gi... - gi\|189365137\|gb\|EDU83553.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4501]... gi\|208806614, gi... - gi\|208806614\|ref\|ZP_03248951.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4... gi\|195939880 - gi\|195939880\|ref\|ZP_03085262.1\| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str. EC40... gi\|189375552, gi... - gi\|189375552\|gb\|EDU93968.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC508],... gi\|168789293, gi... - gi\|189371108\|gb\|EDU89524.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC869],... gi\|168758707, gi... - gi\|189354514\|gb\|EDU72933.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4401]... gi\|188013925, gi... - gi\|188013925\|gb\|EDU52047.1\| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4113]... gi\|254590717, gi... - gi\|254791317\|ref\|YP_003076154.1\| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. TW1...	1493.0	[0..1]	[1160..1]
gi\|251783742, gi... - gi\|251783742\|ref\|YP_002998046.1\| hypothetical protein B21_00181 [Escherichia coli BL21], gi\|24237601... gi\|75229832, gi\|... - gi\|75229832\|ref\|ZP_00716359.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli B7A], gi... gi\|254160303, gi... - gi\|254160303\|ref\|YP_003043411.1\| DNA polymerase III subunit alpha [Escherichia coli B str. REL606], ... gi\|157159649, gi... - gi\|75194394\|ref\|ZP_00704464.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli HS], gi\|... gi\|254287106, gi... - gi\|254287106\|ref\|YP_003052854.1\| DNA polymerase III subunit alpha [Escherichia coli BL21(DE3)], gi\|2... gi\|194421163, gi... - gi\|83584721\|ref\|ZP_00923385.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli 101-1], ...	1492.0	[0..1]	[1160..1]
gi\|91070828, gi\|... - gi\|91209254\|ref\|YP_539240.1\| DNA polymerase III subunit alpha [Escherichia coli UTI89], gi\|91070828\|... gi\|115511593, gi... - gi\|117622469\|ref\|YP_851382.1\| DNA polymerase III subunit alpha [Escherichia coli APEC O1], gi\|115511... gi\|75240227, gi\|... - gi\|75240227\|ref\|ZP_00724174.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli F11], gi... gi\|226902255, gi... - gi\|237704343\|ref\|ZP_04534824.1\| DNA polymerase III subunit alpha [Escherichia sp. 3_2_53FAA], gi\|226... gi\|218363894, gi... - gi\|218557125\|ref\|YP_002390038.1\| DNA polymerase III subunit alpha [Escherichia coli S88], gi\|2183638...	1491.0	[0..1]	[1160..1]
gi\|192959133, gi... - gi\|75238887\|ref\|ZP_00722869.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli E110019]...	1491.0	[0..1]	[1160..1]
gi\|81239722, gi\|... - gi\|82775574\|ref\|YP_401921.1\| DNA polymerase III subunit alpha [Shigella dysenteriae Sd197], gi\|81239...	1491.0	[0..1]	[1160..1]
DPO3A_ECOL6 - DNA polymerase III subunit alpha OS=Escherichia coli O6 GN=dnaE PE=3 SV=1 DPO3A_ECOL6 - DNA polymerase III subunit alpha OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=d... gi\|227884903, gi... - gi\|227884903\|ref\|ZP_04002708.1\| DNA polymerase III subunit alpha [Escherichia coli 83972], gi\|227838...	1491.0	[0..1]	[1160..1]
gi\|194435013, gi... - gi\|83568988\|ref\|ZP_00920452.1\| COG0587: DNA polymerase III, alpha subunit [Shigella dysenteriae 1012...	1491.0	[0..1]	[1160..1]
gi\|110341995, gi... - gi\|110640403\|ref\|YP_668131.1\| DNA polymerase III subunit alpha [Escherichia coli 536], gi\|110341995\|...	1491.0	[0..1]	[1160..1]
gi\|73854281, gi\|... - gi\|74310804\|ref\|YP_309223.1\| DNA polymerase III subunit alpha [Shigella sonnei Ss046], gi\|73854281\|g...	1491.0	[0..1]	[1160..1]
gi\|194428253, gi... - gi\|75210507\|ref\|ZP_00710658.1\| COG0587: DNA polymerase III, alpha subunit [Escherichia coli B171], g...	1490.0	[0..1]	[1160..1]

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Predicted Domain #1

Region A:
Residues: [1-1160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPRFVHLR VHSDYSMIDG LAKTAPLVKK AAALGMPALA ITDFTNLCGL VKFYGAGHGA  60
   61 GIKPIVGADF NVQCDLLGDE LTHLTVLAAN NTGYQNLTLL ISKAYQRGYG AAGPIIDRDW 120
  121 LIELNEGLIL LSGGRMGDVG RSLLRGNSAL VDECVAFYEE HFPDRYFLEL IRTGRPDEES 180
  181 YLHAAVELAE ARGLPVVATN DVRFIDSSDF DAHEIRVAIH DGFTLDDPKR PRNYSPQQYM 240
  241 RSEEEMCELF ADIPEALANT VEIAKRCNVT VRLGEYFLPQ FPTGDMSTED YLVKRAKEGL 300
  301 EERLAFLFPD EEERLKRRPE YDERLETELQ VINQMGFPGY FLIVMEFIQW SKDNGVPVGP 360
  361 GRGSGAGSLV AYALKITDLD PLEFDLLFER FLNPERVSMP DFDVDFCMEK RDQVIEHVAD 420
  421 MYGRDAVSQI ITFGTMAAKA VIRDVGRVLG HPYGFVDRIS KLIPPDPGMT LAKAFEAEPQ 480
  481 LPEIYEADEE VKALIDMARK LEGVTRNAGK HAGGVVIAPT KITDFAPLYC DEEGKHPVTQ 540
  541 FDKSDVEYAG LVKFDFLGLR TLTIINWALE MINKRRAKNG EPPLDIAAIP LDDKKSFDML 600
  601 QRSETTAVFQ LESRGMKDLI KRLQPDCFED MIALVALFRP GPLQSGMVDN FIDRKHGREE 660
  661 ISYPDVQWQH ESLKPVLEPT YGIILYQEQV MQIAQVLSGY TLGGADMLRR AMGKKKPEEM 720
  721 AKQRSVFAEG AEKNGINAEL AMKIFDLVEK FAGYGFNKSH SAAYALVSYQ TLWLKAHYPA 780
  781 EFMAAVMTAD MDNTEKVVGL VDECWRMGLK ILPPDINSGL YHFHVNDDGE IVYGIGAIKG 840
  841 VGEGPIEAII EARNKGGYFR ELFDLCARTD TKKLNRRVLE KLIMSGAFDR LGPHRAALMN 900
  901 SLGDALKAAD QHAKAEAIGQ ADMFGVLAEE PEQIEQSYAS CQPWPEQVVL DGERETLGLY 960
  961 LTGHPINQYL KEIERYVGGV RLKDMHPTER GKVITAAGLV VAARVMVTKR GNRIGICTLD1020
 1021 DRSGRLEVML FTDALDKYQQ LLEKDRILIV SGQVSFDDFS GGLKMTAREV MDIDEAREKY1080
 1081 ARGLAISLTD RQIDDQLLNR LRQSLEPHRS GTIPVHLYYQ RADARARLRF GATWRVSPSD1140
 1141 RLLNDLRGLI GSEQVELEFD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2hpiA
Description:	No description for 2hpiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits