YRC Public Data Repository - Protein Structure Prediction

Protein:	DLX2_RAT
Organism:	Rattus norvegicus
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DLX2_RAT.

Description	E-value	Query Range	Subject Range
DLL4_XENLA - Homeobox protein DLL-4 OS=Xenopus laevis GN=dll4 PE=2 SV=1	104.0	[0..1]	[83..37]
gi\|56118496, gi\|... - gi\|56118496\|ref\|NP_001008061.1\| distal-less homeobox 2 [Xenopus (Silurana) tropicalis], gi\|51704087\|...	104.0	[0..1]	[83..37]
gi\|47218083 - gi\|47218083\|emb\|CAG09955.1\| unnamed protein product [Tetraodon nigroviridis]	102.0	[0..1]	[83..37]
gi\|114581763 - gi\|114581763\|ref\|XP_515908.2\| PREDICTED: distal-less homeobox 2 [Pan troglodytes]	102.0	[0..1]	[83..59]
gi\|110748610 - gi\|110748610\|gb\|ABG89858.1\| Dlx2a [Astyanax mexicanus]	97.0	[0..1]	[83..37]
gi\|76609645 - gi\|76609645\|ref\|XP_882015.1\| PREDICTED: similar to distal-less homeobox 2 isoform 2 [Bos taurus]	97.0	[0..1]	[83..35]
DLX2 - distal-less homeobox 2	96.0	[0..1]	[83..59]
DLX2_MOUSE - Homeobox protein DLX-2 OS=Mus musculus GN=Dlx2 PE=2 SV=1	96.0	[0..1]	[83..62]
gi\|109100071 - gi\|109100071\|ref\|XP_001086012.1\| PREDICTED: distal-less homeobox 2 [Macaca mulatta]	96.0	[0..1]	[83..59]
gi\|63101872 - gi\|63101872\|gb\|AAH95303.1\| Dlx2a protein [Danio rerio]	96.0	[0..1]	[83..37]

Back

Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STATDSSYYT NQQHPAGGGG GGASPYAHMG SYQYHASGLN NVSYSAKSSY DLGYTAAYTS  60
   61 YAPYGTSSSP VNNEPDKEDL EPE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.429	a.60.1	SAM/Pointed domain
View	Download	0.406	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.374	a.135.1	Tetraspanin
View	Download	0.374	a.135.1	Tetraspanin
View	Download	0.347	a.3.1	Cytochrome c
View	Download	0.320	a.4.12	TrpR-like
View	Download	0.277	a.60.1	SAM/Pointed domain
View	Download	0.258	a.64.1	Saposin
View	Download	0.232	a.64.2	Bacteriocin AS-48

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits