YRC Public Data Repository - Protein Structure Prediction

Protein:	DLHH_SALTY
Organism:	Salmonella typhimurium
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DLHH_SALTY.

Description	E-value	Query Range	Subject Range
gi\|24115126, gi\|... - gi\|24115126\|ref\|NP_709636.1\| putative enzyme [Shigella flexneri 2a str. 301], gi\|24054396\|gb\|AAN4534...	2.0E-46	[1..269]	[23..291]
gi\|25499550, gi\|... - gi\|25499550\|pir\|\|F86070 probable enzyme Z5352 [imported] - Escherichia coli (strain O157:H7, substra... gi\|12518707, gi\|... - gi\|15804422\|ref\|NP_290462.1\| putative enzyme [Escherichia coli O157:H7 EDL933], gi\|12518707\|gb\|AAG59... gi\|13364236, gi\|... - gi\|15834014\|ref\|NP_312787.1\| hypothetical protein ECs4760 [Escherichia coli O157:H7], gi\|13364236\|db... gi\|13364236, gi\|... - gi\|15834014\|ref\|NP_312787.1\| hypothetical protein ECs4760 [Escherichia coli O157:H7 str. Sakai], gi\|...	3.0E-46	[1..269]	[23..291]
gi\|82546183, gi\|... - gi\|82546183\|ref\|YP_410130.1\| putative enzyme [Shigella boydii Sb227], gi\|81247594\|gb\|ABB68302.1\| put...	4.0E-46	[1..269]	[23..291]
gi\|75209543 - gi\|75209543\|ref\|ZP_00709764.1\| COG0412: Dienelactone hydrolase and related enzymes [Escherichia coli... gi\|75188572 - gi\|75188572\|ref\|ZP_00701839.1\| COG0412: Dienelactone hydrolase and related enzymes [Escherichia coli... gi\|75238280 - gi\|75238280\|ref\|ZP_00722279.1\| COG0412: Dienelactone hydrolase and related enzymes [Escherichia coli... gi\|75230791 - gi\|75230791\|ref\|ZP_00717254.1\| COG0412: Dienelactone hydrolase and related enzymes [Escherichia coli...	7.0E-46	[1..269]	[19..287]
gi\|75197713 - gi\|75197713\|ref\|ZP_00707783.1\| COG0412: Dienelactone hydrolase and related enzymes [Escherichia coli...	7.0E-46	[1..269]	[19..287]
gi\|83569334 - gi\|83569334\|ref\|ZP_00920789.1\| COG0412: Dienelactone hydrolase and related enzymes [Shigella dysente...	9.0E-46	[1..269]	[19..287]
gi\|75256246 - gi\|75256246\|ref\|ZP_00727924.1\| COG0412: Dienelactone hydrolase and related enzymes [Escherichia coli...	2.0E-45	[1..269]	[19..287]
gi\|75512615 - gi\|75512615\|ref\|ZP_00735127.1\| COG0412: Dienelactone hydrolase and related enzymes [Escherichia coli...	2.0E-45	[1..269]	[19..287]
gi\|81243137, gi\|... - gi\|82778989\|ref\|YP_405338.1\| putative enzyme [Shigella dysenteriae Sd197], gi\|81243137\|gb\|ABB63847.1...	3.0E-45	[1..268]	[19..286]
gi\|75177796 - gi\|75177796\|ref\|ZP_00697861.1\| COG0412: Dienelactone hydrolase and related enzymes [Shigella boydii ...	4.0E-45	[1..269]	[19..287]

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Predicted Domain #1

Region A:
Residues: [1-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTHPSGFA PAASPLAPTM IHTPDGAISA GITSIPSQGD DMPAYYARPK ASDGALPVVI  60
   61 VVQEIFGVHE HIRDICRRLA LEGYLAIAPE LYFREGDPND FADIPTLLSG LVAKVPDSQV 120
  121 LADLDHVASW ASRNGGDAHR LMITGFCWGG RITWLYAAHN PQLKAAVAWY GKLVGDTSLN 180
  181 SPKHPVDIAT DLNAPVLGLY GGQDTSIPQE SVETMRQALR AANAKAEIVV YPDAGHAFNA 240
  241 DYRPGYHEAS AKDGWQRMLE WFAQYGGKKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.221849
Match:	2gbcA
Description:	No description for 2gbcA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits