YRC Public Data Repository - Protein Structure Prediction

Protein:	DJLA_ECOLI
Organism:	Escherichia coli
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DJLA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|62178659, gi\|... - gi\|62178659\|ref\|YP_215076.1\| DNA-J like membrane chaperone protein [Salmonella enterica subsp. enter...	251.0	[0..1]	[271..1]
DJLA_SALTY - DnaJ-like protein djlA OS=Salmonella typhimurium GN=djlA PE=3 SV=1 DJLA_SALTI - DnaJ-like protein djlA OS=Salmonella typhi GN=djlA PE=3 SV=1 gi\|205324336, gi... - gi\|205324336\|gb\|EDZ12175.1\| DnaJ domain protein [Salmonella enterica subsp. enterica serovar Saintpa... DJLA_SALPA - DnaJ-like protein DjlA OS=Salmonella paratyphi A GN=djlA PE=3 SV=1 gi\|168230364, gi... - gi\|205334948\|gb\|EDZ21712.1\| DnaJ domain protein [Salmonella enterica subsp. enterica serovar Kentuck... gi\|168234850, gi... - gi\|197291882\|gb\|EDY31232.1\| DnaJ domain protein [Salmonella enterica subsp. enterica serovar Schwarz... gi\|168243498, gi... - gi\|205337463\|gb\|EDZ24227.1\| DnaJ domain protein [Salmonella enterica subsp. enterica serovar Heidelb... gi\|161361795, gi... - gi\|161612431\|ref\|YP_001586396.1\| Dna-J like membrane chaperone protein [Salmonella enterica subsp. e... DJLA_SALTY - DnaJ-like protein DjlA OS=Salmonella typhimurium GN=djlA PE=3 SV=1 gi\|206707410, gi... - gi\|207855607\|ref\|YP_002242258.1\| Dna-J like membrane chaperone protein [Salmonella enterica subsp. e... gi\|213427537 - gi\|213427537\|ref\|ZP_03360287.1\| Dna-J like membrane chaperone protein [Salmonella enterica subsp. en... gi\|213580243 - gi\|213580243\|ref\|ZP_03362069.1\| Dna-J like membrane chaperone protein [Salmonella enterica subsp. en... gi\|213646895 - gi\|213646895\|ref\|ZP_03376948.1\| Dna-J like membrane chaperone protein [Salmonella enterica subsp. en... gi\|198243576, gi... - gi\|198243576\|ref\|YP_002214047.1\| DnaJ domain protein [Salmonella enterica subsp. enterica serovar Du... gi\|199604617, gi... - gi\|200387519\|ref\|ZP_03214131.1\| DnaJ domain protein [Salmonella enterica subsp. enterica serovar Vir... gi\|204926798, gi... - gi\|204926798\|ref\|ZP_03218000.1\| DnaJ domain protein [Salmonella enterica subsp. enterica serovar Jav... gi\|205351434, gi... - gi\|205351434\|ref\|YP_002225235.1\| Dna-J like membrane chaperone protein [Salmonella enterica subsp. e... gi\|194738079, gi... - gi\|194738079\|ref\|YP_002113112.1\| DnaJ domain protein [Salmonella enterica subsp. enterica serovar Sc... gi\|197249861, gi... - gi\|197249861\|ref\|YP_002145079.1\| DnaJ domain protein [Salmonella enterica subsp. enterica serovar Ag... gi\|197243706, gi... - gi\|197265451\|ref\|ZP_03165525.1\| DnaJ domain protein [Salmonella enterica subsp. enterica serovar Sai... gi\|197092777, gi... - gi\|197361302\|ref\|YP_002140937.1\| Dna-J like membrane chaperone protein [Salmonella enterica subsp. e... gi\|205348751, gi... - gi\|205348751\|gb\|EDZ35382.1\| DnaJ domain protein [Salmonella enterica subsp. enterica serovar Hadar s... gi\|194400886, gi... - gi\|194442223\|ref\|YP_002039325.1\| DnaJ domain protein [Salmonella enterica subsp. enterica serovar Ne... gi\|194409280, gi... - gi\|194450976\|ref\|YP_002044063.1\| Dna-J like membrane chaperone protein [Salmonella enterica subsp. e... gi\|194472581, gi... - gi\|194472581\|ref\|ZP_03078565.1\| DnaJ domain protein [Salmonella enterica subsp. enterica serovar Ken... lcl\|NC_016856.1_... - [gene=djlA] [protein=DNA-J like membrane chaperone protein] [protein_id=YP_005235747.1] [location=10... DJLA_SALTI - Co-chaperone protein DjlA OS=Salmonella typhi GN=djlA PE=3 SV=1 DJLA_SALTY - Co-chaperone protein DjlA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=djlA PE... gi\|213853062 - gi\|213853062\|ref\|ZP_03382594.1\| Dna-J like membrane chaperone protein [Salmonella enterica subsp. en... gi\|238911152 - gi\|238911152\|ref\|ZP_04654989.1\| Dna-J like membrane chaperone protein [Salmonella enterica subsp. en... gi\|29136263, gi\|... - gi\|29140639\|ref\|NP_803981.1\| DNA-J like membrane chaperone protein [Salmonella enterica subsp. enter... gi\|214001245 - gi\|214001245\|ref\|ZP_03411980.1\| Dna-J like membrane chaperone protein [Salmonella enterica subsp. en... gi\|16759089 - gi\|16759089\|ref\|NP_454706.1\| DNA-J like membrane chaperone protein [Salmonella enterica subsp. enter... gi\|224581937, gi... - gi\|224581937\|ref\|YP_002635735.1\| Dna-J like membrane chaperone protein [Salmonella enterica subsp. e... DJLA_SALPA - Co-chaperone protein DjlA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=djlA PE=3 SV=1	251.0	[0..1]	[271..1]
gi\|91209117, gi\|... - gi\|91209117\|ref\|YP_539103.1\| DnaJ-like protein DjlA [Escherichia coli UTI89], gi\|91070691\|gb\|ABE0557... gi\|26245981, gi\|... - gi\|26245981\|ref\|NP_752020.1\| Dna-J like membrane chaperone protein [Escherichia coli CFT073], gi\|261... gi\|237704201, gi... - gi\|237704201\|ref\|ZP_04534682.1\| predicted protein [Escherichia sp. 3_2_53FAA], gi\|226902113\|gb\|EEH88... gi\|117622345, gi... - gi\|117622345\|ref\|YP_851258.1\| DNA-J like membrane chaperone protein [Escherichia coli APEC O1], gi\|1...	250.0	[0..1]	[271..32]
gi\|75234296 - gi\|75234296\|ref\|ZP_00718674.1\| COG1076: DnaJ-domain-containing proteins 1 [Escherichia coli E110019]	249.0	[0..1]	[271..1]
gi\|208734691, gi... - gi\|208813414\|ref\|ZP_03254743.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC4045], gi\|20873... gi\|209400473, gi... - gi\|209400473\|ref\|YP_002268665.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC4115], gi\|2091... gi\|209917247, gi... - gi\|209917247\|ref\|YP_002291331.1\| Dna-J like membrane chaperone protein [Escherichia coli SE11], gi\|2... gi\|217325573, gi... - gi\|217325573\|ref\|ZP_03441657.1\| DnaJ domain protein [Escherichia coli O157:H7 str. TW14588], gi\|2173... gi\|218552640, gi... - gi\|218552640\|ref\|YP_002385553.1\| Dna-J like membrane chaperone protein [Escherichia coli IAI1], gi\|2... gi\|218350259, gi... - gi\|218693527\|ref\|YP_002401194.1\| Dna-J like membrane chaperone protein [Escherichia coli 55989], gi\|... gi\|218368463, gi... - gi\|218698477\|ref\|YP_002406106.1\| Dna-J like membrane chaperone protein [Escherichia coli IAI39], gi\|... gi\|218703316, gi... - gi\|218703316\|ref\|YP_002410835.1\| Dna-J like membrane chaperone protein [Escherichia coli UMN026], gi... gi\|110613669, gi... - gi\|110804121\|ref\|YP_687641.1\| DNA-J like membrane chaperone protein [Shigella flexneri 5 str. 8401],... gi\|15829314, gi\|... - gi\|15829314\|ref\|NP_308087.1\| Dna-J like membrane chaperone protein [Escherichia coli O157:H7 str. Sa... gi\|168756886, gi... - gi\|189356092\|gb\|EDU74511.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC4401], gi\|168756886... gi\|189364062, gi... - gi\|189364062\|gb\|EDU82481.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC4486], gi\|168766750... DJLA_SHIFL - Co-chaperone protein DjlA OS=Shigella flexneri GN=djlA PE=3 SV=1 gi\|189374721, gi... - gi\|189374721\|gb\|EDU93137.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC869], gi\|168785113\|... gi\|195937731 - gi\|195937731\|ref\|ZP_03083113.1\| Dna-J like membrane chaperone protein [Escherichia coli O157:H7 str.... gi\|25363604, gi\|... - gi\|25363604\|pir\|\|D90636 probable DNA binding protein [imported] - Escherichia coli (strain O157:H7,... gi\|12512750, gi\|... - gi\|15799740\|ref\|NP_285752.1\| DNA-J like membrane chaperone protein [Escherichia coli O157:H7 EDL933]... gi\|30039864, gi\|... - gi\|30061622\|ref\|NP_835793.1\| DNA-J like membrane chaperone protein [Shigella flexneri 2a str. 2457T]... gi\|254791194, gi... - gi\|254791194\|ref\|YP_003076031.1\| DnaJ-like membrane chaperone protein [Escherichia coli O157:H7 str.... gi\|56383142, gi\|... - gi\|56479591\|ref\|NP_706011.2\| DNA-J like membrane chaperone protein [Shigella flexneri 2a str. 301], ... gi\|82542661, gi\|... - gi\|82542661\|ref\|YP_406608.1\| DNA-J like membrane chaperone protein [Shigella boydii Sb227], gi\|81244... gi\|82775460, gi\|... - gi\|82775460\|ref\|YP_401807.1\| DNA-J like membrane chaperone protein [Shigella dysenteriae Sd197], gi\|... gi\|74310674, gi\|... - gi\|74310674\|ref\|YP_309093.1\| DNA-J like membrane chaperone protein [Shigella sonnei Ss046], gi\|73854... DJLA_ECO57 - Co-chaperone protein DjlA OS=Escherichia coli O157:H7 GN=djlA PE=3 SV=1 gi\|75209421 - gi\|75209421\|ref\|ZP_00709653.1\| COG1076: DnaJ-domain-containing proteins 1 [Escherichia coli B171]	249.0	[0..1]	[271..1]
gi\|75194276, gi\|... - gi\|75194276\|ref\|ZP_00704346.1\| COG1076: DnaJ-domain-containing proteins 1 [Escherichia coli HS], gi\|...	248.0	[0..1]	[271..1]
gi\|75175615, gi\|... - gi\|75175615\|ref\|ZP_00695823.1\| COG1076: DnaJ-domain-containing proteins 1 [Shigella boydii BS512], g...	248.0	[0..1]	[271..1]
gi\|75236946, gi\|... - gi\|75236946\|ref\|ZP_00721005.1\| COG1076: DnaJ-domain-containing proteins 1 [Escherichia coli F11], gi...	248.0	[0..1]	[271..1]
DJLA_ECOL6 - DnaJ-like protein DjlA OS=Escherichia coli O6 GN=djlA PE=3 SV=2 gi\|215485219, gi... - gi\|215485219\|ref\|YP_002327650.1\| Dna-J like membrane chaperone protein [Escherichia coli O127:H6 str... gi\|162138511 - gi\|162138511\|ref\|YP_539103.2\| DNA-J like membrane chaperone protein [Escherichia coli UTI89] gi\|218687933, gi... - gi\|218687933\|ref\|YP_002396145.1\| Dna-J like membrane chaperone protein [Escherichia coli ED1a], gi\|2... gi\|218363765, gi... - gi\|218556996\|ref\|YP_002389909.1\| Dna-J like membrane chaperone protein [Escherichia coli S88], gi\|21... DJLA_ECOL6 - Co-chaperone protein DjlA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=djlA PE=...	248.0	[0..1]	[271..1]
gi\|110640269, gi... - gi\|110640269\|ref\|YP_667997.1\| Dna-J like membrane chaperone protein [Escherichia coli 536], gi\|11034...	247.0	[0..1]	[271..1]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYWGKIIGV AVALLMGGGF WGVVLGLLIG HMFDKARSRK MAWFANQRER QALFFATTFE  60
   61 VMGHLTKSKG RVTEADIHIA SQLMDRMNLH GASRTAAQNA FRVGKSDNYP LREKMRQFRS 120
  121 VCFGRFDLIR MFLEIQIQAA FADGSLHPNE RAVLYVIAEE LGISRAQFDQ FLRMMQGGAQ 180
  181 FGGGY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.71
Match:	2ou3A
Description:	No description for 2ou3A was found.

Predicted Domain #2

Region A:
Residues: [186-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQQTGGGNWQ QAQRGPTLED ACNVLGVKPT DDATTIKRAY RKLMSEHHPD KLVAKGLPPE  60
   61 MMEMAKQKAQ EIQQAYELIK QQKGFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	2ctwA
Description:	Solution structure of J-domain from mouse DnaJ subfamily C menber 5
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits