YRC Public Data Repository - Protein Structure Prediction

Protein:	DINJ_ECOLI
Organism:	Escherichia coli
Length:	86 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DINJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|218698828, gi... - gi\|218698828\|ref\|YP_002406457.1\| antitoxin of YafQ-DinJ toxin-antitoxin system [Escherichia coli IAI... gi\|81239765, gi\|... - gi\|82775617\|ref\|YP_401964.1\| damage-inducible protein J [Shigella dysenteriae Sd197], gi\|81239765\|gb...	112.0	[0..1]	[86..1]
gi\|209917438, gi... - gi\|209917438\|ref\|YP_002291522.1\| DNA-damage-inducible protein J [Escherichia coli SE11], gi\|20991069... gi\|218552831, gi... - gi\|218552831\|ref\|YP_002385744.1\| antitoxin of YafQ-DinJ toxin-antitoxin system [Escherichia coli IAI... gi\|170021386, gi... - gi\|170021386\|ref\|YP_001726340.1\| addiction module antitoxin [Escherichia coli ATCC 8739], gi\|1697563... gi\|194422880, gi... - gi\|83586306\|ref\|ZP_00924941.1\| COG3077: DNA-damage-inducible protein J [Escherichia coli 101-1], gi\|... gi\|124526889, gi... - gi\|124526889\|ref\|ZP_01698771.1\| addiction module antitoxin, RelB/DinJ family [Escherichia coli B], g... gi\|83570260, gi\|... - gi\|83570260\|ref\|ZP_00921706.1\| COG3077: DNA-damage-inducible protein J [Shigella dysenteriae 1012], ... gi\|191165765, gi... - gi\|75231172\|ref\|ZP_00717594.1\| COG3077: DNA-damage-inducible protein J [Escherichia coli B7A], gi\|19... gi\|75211204, gi\|... - gi\|75211204\|ref\|ZP_00711311.1\| COG3077: DNA-damage-inducible protein J [Escherichia coli B171], gi\|1... gi\|157065389, gi... - gi\|75194447\|ref\|ZP_00704517.1\| COG3077: DNA-damage-inducible protein J [Escherichia coli HS], gi\|157... gi\|157155542, gi... - gi\|75189332\|ref\|ZP_00702599.1\| COG3077: DNA-damage-inducible protein J [Escherichia coli E24377A], g... gi\|74310868, gi\|... - gi\|74310868\|ref\|YP_309287.1\| damage-inducible protein J [Shigella sonnei Ss046], gi\|73854345\|gb\|AAZ8... gi\|75513626, gi\|... - gi\|75513626\|ref\|ZP_00736017.1\| COG3077: DNA-damage-inducible protein J [Escherichia coli 53638], gi\|... gi\|192931192, gi... - gi\|75258769\|ref\|ZP_00730159.1\| COG3077: DNA-damage-inducible protein J [Escherichia coli E22], gi\|19... gi\|75237314, gi\|... - gi\|75237314\|ref\|ZP_00721361.1\| COG3077: DNA-damage-inducible protein J [Escherichia coli E110019], g... gi\|218350442, gi... - gi\|218693710\|ref\|YP_002401377.1\| antitoxin of YafQ-DinJ toxin-antitoxin system [Escherichia coli 559... gi\|254287145, gi... - gi\|254287145\|ref\|YP_003052893.1\| predicted antitoxin of YafQ-DinJ toxin-antitoxin system [Escherichi... gi\|242376057, gi... - gi\|251783784\|ref\|YP_002998088.1\| hypothetical protein B21_00225 [Escherichia coli BL21], gi\|24237605... gi\|253972243, gi... - gi\|254160342\|ref\|YP_003043450.1\| predicted antitoxin of YafQ-DinJ toxin-antitoxin system [Escherichi...	111.0	[0..1]	[86..1]
gi\|208814393, gi... - gi\|208814393\|ref\|ZP_03255722.1\| addiction module antitoxin component DinJ [Escherichia coli O157:H7 ... gi\|208806821, gi... - gi\|208806821\|ref\|ZP_03249158.1\| addiction module antitoxin component DinJ [Escherichia coli O157:H7 ... gi\|13359710, gi\|... - gi\|15829507\|ref\|NP_308280.1\| DinJ [Escherichia coli O157:H7 str. Sakai], gi\|13359710\|dbj\|BAB33676.1\|... gi\|209158367, gi... - gi\|209396967\|ref\|YP_002268853.1\| addiction module antitoxin component DinJ [Escherichia coli O157:H7... gi\|208739810, gi... - gi\|208819687\|ref\|ZP_03260007.1\| addiction module antitoxin component DinJ [Escherichia coli O157:H7 ... gi\|189370776, gi... - gi\|189370776\|gb\|EDU89192.1\| addiction module antitoxin component DinJ [Escherichia coli O157:H7 str.... gi\|188999587, gi... - gi\|188999587\|gb\|EDU68573.1\| addiction module antitoxin component DinJ [Escherichia coli O157:H7 str.... gi\|195938629 - gi\|195938629\|ref\|ZP_03084011.1\| DinJ [Escherichia coli O157:H7 str. EC4024] gi\|189377345, gi... - gi\|189377345\|gb\|EDU95761.1\| addiction module antitoxin component DinJ [Escherichia coli O157:H7 str.... gi\|254791385, gi... - gi\|254791385\|ref\|YP_003076222.1\| predicted antitoxin of YafQ-DinJ toxin-antitoxin system [Escherichi... gi\|168763467, gi... - gi\|189366375\|gb\|EDU84791.1\| addiction module antitoxin component DinJ [Escherichia coli O157:H7 str.... gi\|189355729, gi... - gi\|189355729\|gb\|EDU74148.1\| addiction module antitoxin component DinJ [Escherichia coli O157:H7 str.... gi\|187768409, gi... - gi\|187768409\|gb\|EDU32253.1\| addiction module antitoxin component DinJ [Escherichia coli O157:H7 str.... gi\|168770024, gi... - gi\|189361091\|gb\|EDU79510.1\| addiction module antitoxin component DinJ [Escherichia coli O157:H7 str.... gi\|168750209, gi... - gi\|188015579\|gb\|EDU53701.1\| addiction module antitoxin component DinJ [Escherichia coli O157:H7 str.... gi\|13359710, gi\|... - gi\|15829507\|ref\|NP_308280.1\| DinJ [Escherichia coli O157:H7], gi\|13359710\|dbj\|BAB33676.1\| damage-ind... gi\|209745406, gi... - pir\|\|C85511 damage-inducible protein J [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|12512997, gi\|... - gi\|15799931\|ref\|NP_285943.1\| damage-inducible protein J [Escherichia coli O157:H7 EDL933], gi\|125129... gi\|217325854, gi... - gi\|217325854\|ref\|ZP_03441938.1\| addiction module antitoxin component DinJ [Escherichia coli O157:H7 ...	110.0	[0..1]	[86..1]
gi\|110829977, gi... - gi\|121611896\|ref\|YP_999703.1\| addiction module antitoxin [Verminephrobacter eiseniae EF01-2], gi\|121...	107.0	[0..1]	[86..1]
gi\|6175623, gi\|1... - gi\|6175623\|gb\|AAF05107.1\|AF152923_11 ORF11 [Yersinia pestis], gi\|10955845\|ref\|NP_053144.1\| hypotheti...	104.0	[0..1]	[86..1]
gi\|62195076, gi\|... - gi\|62195076\|ref\|YP_220431.1\| hypothetical protein p49879_2p22 [Leptospirillum ferrooxidans], gi\|6110...	104.0	[0..1]	[86..1]
gi\|71725271, gi\|... - gi\|71725271\|ref\|YP_272311.1\| DNA-damage-inducible protein [Pseudomonas syringae pv. phaseolicola 144...	103.0	[0..1]	[85..11]
gi\|197937976, gi... - gi\|198243460\|ref\|YP_002217477.1\| DNA-damage-inducible protein J [Salmonella enterica subsp. enterica... gi\|205354859, gi... - gi\|205354859\|ref\|YP_002228660.1\| conserved hypothetical protein (homologue of DnaJ: DNA damage induc... lcl\|NC_016856.1_... - [gene=STM14_4236] [protein=putative DNA-damage-inducibile protein] [protein_id=YP_005239722.1] [loca... gi\|205330787, gi... - gi\|205330787\|gb\|EDZ17551.1\| DNA-damage-inducible protein J [Salmonella enterica subsp. enterica sero... gi\|16766805, gi\|... - gi\|16766805\|ref\|NP_462420.1\| putative DNA-damage-inducibile protein [Salmonella typhimurium LT2], gi... gi\|206710560, gi... - gi\|207858757\|ref\|YP_002245408.1\| conserved hypothetical protein (homologue of DnaJ: DNA damage induc...	103.0	[0..1]	[86..1]
gi\|19070020, gi\|... - gi\|19352353\|ref\|NP_598111.1\| damage inducible-like protein [uncultured bacterium], gi\|19070020\|emb\|C...	103.0	[0..1]	[84..1]

Back

Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAANAFVRAR IDEDLKNQAA DVLAGMGLTI SDLVRITLTK VAREKALPFD LREPNQLTIQ  60
   61 SIKNSEAGID VHKAKDADDL FDKLGI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	41.677781
Match:	PF04221.3
Description:	No description for PF04221.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.800	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits