YRC Public Data Repository - Protein Structure Prediction

Protein:	DING_ECOLI
Organism:	Escherichia coli
Length:	716 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DING_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75189840 - gi\|75189840\|ref\|ZP_00703107.1\| COG1199: Rad3-related DNA helicases [Escherichia coli E24377A]	405.0	[0..1]	[716..37]
gi\|75238134 - gi\|75238134\|ref\|ZP_00722138.1\| COG1199: Rad3-related DNA helicases [Escherichia coli F11]	404.0	[0..1]	[716..31]
gi\|81240272, gi\|... - gi\|82776124\|ref\|YP_402471.1\| ATP-dependent DNA helicase DinG [Shigella dysenteriae Sd197], gi\|812402...	404.0	[0..1]	[716..1]
gi\|75512802, gi\|... - gi\|75512802\|ref\|ZP_00735294.1\| COG1199: Rad3-related DNA helicases [Escherichia coli 53638], gi\|1884... gi\|157065955, gi... - gi\|75194950\|ref\|ZP_00705020.1\| COG1199: Rad3-related DNA helicases [Escherichia coli HS], gi\|1571602... gi\|170020845, gi... - gi\|170020845\|ref\|YP_001725799.1\| ATP-dependent DNA helicase DinG [Escherichia coli ATCC 8739], gi\|16... gi\|124527018, gi... - gi\|124527018\|ref\|ZP_01698855.1\| helicase c2 [Escherichia coli B], gi\|124501363\|gb\|EAY48827.1\| helica...	404.0	[0..1]	[716..1]
gi\|91209833, gi\|... - gi\|91209833\|ref\|YP_539819.1\| ATP-dependent DNA helicase DinG [Escherichia coli UTI89], gi\|91071407\|g... gi\|110342595, gi... - gi\|110641003\|ref\|YP_668731.1\| ATP-dependent DNA helicase DinG [Escherichia coli 536], gi\|110342595\|g... gi\|218688585, gi... - gi\|218688585\|ref\|YP_002396797.1\| ATP-dependent DNA helicase DinG [Escherichia coli ED1a], gi\|2184261... gi\|218557704, gi... - gi\|218557704\|ref\|YP_002390617.1\| ATP-dependent DNA helicase DinG [Escherichia coli S88], gi\|21836447... gi\|218357175, gi... - gi\|218549634\|ref\|YP_002383425.1\| ATP-dependent DNA helicase DinG [Escherichia fergusonii ATCC 35469]... gi\|215485886, gi... - gi\|215485886\|ref\|YP_002328317.1\| ATP-dependent DNA helicase DinG [Escherichia coli O127:H6 str. E234... DING_ECOL6 - Probable ATP-dependent helicase dinG OS=Escherichia coli O6 GN=dinG PE=3 SV=1 gi\|227838990, gi... - gi\|227884238\|ref\|ZP_04002043.1\| ATP-dependent DNA helicase DinG [Escherichia coli 83972], gi\|2278389... DING_ECOL6 - Probable ATP-dependent helicase DinG OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) ... gi\|226898451, gi... - gi\|237707241\|ref\|ZP_04537722.1\| ATP-dependent DNA helicase DinG [Escherichia sp. 3_2_53FAA], gi\|2268... gi\|117622981, gi... - gi\|117622981\|ref\|YP_851894.1\| ATP-dependent DNA helicase DinG [Escherichia coli APEC O1], gi\|1155121...	402.0	[0..1]	[716..1]
gi\|110804798, gi... - gi\|110804798\|ref\|YP_688319.1\| ATP-dependent DNA helicase DinG [Shigella flexneri 5 str. 8401], gi\|11...	402.0	[0..1]	[716..46]
gi\|254791994, gi... - gi\|254791994\|ref\|YP_003076831.1\| ATP-dependent DNA helicase [Escherichia coli O157:H7 str. TW14359],... gi\|25389945, gi\|... - pir\|\|E90738 probably ATP-dependent helicase [imported] - Escherichia coli (strain O157:H7, substrain... DING_ECO57 - Probable ATP-dependent helicase DinG OS=Escherichia coli O157:H7 GN=dinG PE=3 SV=3 gi\|13360336, gi\|... - gi\|15830131\|ref\|NP_308904.1\| ATP-dependent DNA helicase DinG [Escherichia coli O157:H7 str. Sakai], ...	402.0	[0..1]	[716..1]
gi\|218360153, gi... - gi\|218553385\|ref\|YP_002386298.1\| ATP-dependent DNA helicase DinG [Escherichia coli IAI1], gi\|2183601... gi\|209918046, gi... - gi\|209918046\|ref\|YP_002292130.1\| ATP-dependent DNA helicase DinG [Escherichia coli SE11], gi\|2099113... gi\|75236143 - gi\|75236143\|ref\|ZP_00720267.1\| COG1199: Rad3-related DNA helicases [Escherichia coli E110019]	402.0	[0..1]	[716..1]
gi\|75230642 - gi\|75230642\|ref\|ZP_00717113.1\| COG1199: Rad3-related DNA helicases [Escherichia coli B7A]	401.0	[0..1]	[716..1]
gi\|25500125 - pir\|\|G85588 probable ATP-dependent helicase Z1020 [imported] - Escherichia coli (strain O157:H7, sub... gi\|15800551, gi\|... - gi\|15800551\|ref\|NP_286563.1\| ATP-dependent DNA helicase DinG [Escherichia coli O157:H7 EDL933], gi\|1...	401.0	[0..1]	[716..1]

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Predicted Domain #1

Region A:
Residues: [1-716]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALTAALKAQ IAAWYKALQE QIPDFIPRAP QRQMIADVAK TLAGEEGRHL AIEAPTGVGK  60
   61 TLSYLIPGIA IAREEQKTLV VSTANVALQD QIYSKDLPLL KKIIPDLKFT AAFGRGRYVC 120
  121 PRNLTALAST EPTQQDLLAF LDDELTPNNQ EEQKRCAKLK GDLDTYKWDG LRDHTDIAID 180
  181 DDLWRRLSTD KASCLNRNCY YYRECPFFVA RREIQEAEVV VANHALVMAA MESEAVLPDP 240
  241 KNLLLVLDEG HHLPDVARDA LEMSAEITAP WYRLQLDLFT KLVATCMEQF RPKTIPPLAI 300
  301 PERLNAHCEE LYELIASLNN ILNLYMPAGQ EAEHRFAMGE LPDEVLEICQ RLAKLTEMLR 360
  361 GLAELFLNDL SEKTGSHDIV RLHRLILQMN RALGMFEAQS KLWRLASLAQ SSGAPVTKWA 420
  421 TREEREGQLH LWFHCVGIRV SDQLERLLWR SIPHIIVTSA TLRSLNSFSR LQEMSGLKEK 480
  481 AGDRFVALDS PFNHCEQGKI VIPRMRVEPS IDNEEQHIAE MAAFFRKQVE SKKHLGMLVL 540
  541 FASGRAMQRF LDYVTDLRLM LLVQGDQPRY RLVELHRKRV ANGERSVLVG LQSFAEGLDL 600
  601 KGDLLSQVHI HKIAFPPIDS PVVITEGEWL KSLNRYPFEV QSLPSASFNL IQQVGRLIRS 660
  661 HGCWGEVVIY DKRLLTKNYG KRLLDALPVF PIEQPEVPEG IVKKKEKTKS PRRRRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.221849
Match:	2d7dA
Description:	No description for 2d7dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits