YRC Public Data Repository - Protein Structure Prediction

Protein:	DHSD_ECOLI
Organism:	Escherichia coli
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DHSD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|113873568, gi... - gi\|113873568\|ref\|ZP_01413697.1\| Succinate dehydrogenase hydrophobic anchor subunit-like [Sinorhizobi...	139.0	[0..3]	[115..161]
gi\|23502754, gi\|... - gi\|23502754\|ref\|NP_698881.1\| succinate dehydrogenase, hydrophobic membrane anchor protein, putative ...	114.0	[0..3]	[115..15]
gi\|110635574, gi... - gi\|69274736\|ref\|ZP_00610648.1\| Succinate dehydrogenase, cytochrome b subunit [Mesorhizobium sp. BNC1...	114.0	[0..3]	[115..11]
gi\|254731079 - gi\|254731079\|ref\|ZP_05189657.1\| succinate dehydrogenase [Brucella abortus bv. 4 str. 292] gi\|254694536 - gi\|254694536\|ref\|ZP_05156364.1\| succinate dehydrogenase [Brucella abortus bv. 3 str. Tulya] gi\|254696161 - gi\|254696161\|ref\|ZP_05157989.1\| succinate dehydrogenase [Brucella abortus bv. 2 str. 86/8/59] gi\|189024972, gi... - gi\|189024972\|ref\|YP_001935740.1\| succinate dehydrogenase [Brucella abortus S19], gi\|189020544\|gb\|ACD... gi\|82700670 - gi\|82700670\|ref\|YP_415244.1\| hypothetical protein BAB1_1902 [Brucella melitensis biovar Abortus 2308... gi\|82616771 - gi\|82616771\|emb\|CAJ11858.1\| unnamed protein product [Brucella melitensis biovar Abortus 2308] gi\|237788332, gi... - gi\|237816265\|ref\|ZP_04595258.1\| succinate dehydrogenase, hydrophobic membrane anchor protein [Brucel... gi\|62196891, gi\|... - gi\|62290759\|ref\|YP_222552.1\| succinate dehydrogenase, hydrophobic membrane anchor protein [Brucella ... gi\|254690048 - gi\|254690048\|ref\|ZP_05153302.1\| succinate dehydrogenase [Brucella abortus bv. 6 str. 870]	114.0	[0..3]	[115..15]
gi\|17986444, gi\|... - gi\|17986444\|ref\|NP_539078.1\| succinate dehydrogenase hydrophobic membrane anchor protein [Brucella m... gi\|25358748 - pir\|\|AC3272 succinate dehydrogenase hydrophobic membrane anchor protein [imported] - Brucella melite...	113.0	[0..3]	[115..12]
gi\|13473608, gi\|... - gi\|14024358\|dbj\|BAB50962.1\| succinate dehydrogenase cytochrome b small subunit [Mesorhizobium loti M...	112.0	[0..3]	[115..16]
gi\|91801970, gi\|... - gi\|92119076\|ref\|YP_578805.1\| succinate dehydrogenase, cytochrome b subunit [Nitrobacter hamburgensis...	111.0	[0..3]	[115..17]
gi\|15966824 - gi\|15966824\|ref\|NP_387177.1\| succinate dehydrogenase membrane anchor subunit protein [Sinorhizobium ... gi\|15076096 - gi\|15076096\|emb\|CAC47650.1\| Probable succinate dehydrogenase membrane anchor subunit [Sinorhizobium ...	108.0	[0..3]	[115..10]
gi\|116254177, gi... - gi\|116254177\|ref\|YP_770015.1\| putative succinate dehydrogenase hydrophobic membrane anchor protein [...	107.0	[0..3]	[115..10]
gi\|17429013 - gi\|17429013\|emb\|CAD15697.1\| putative transmembrane succinate dehydrogenase (hydrophobic membrane anc... gi\|17546714 - gi\|17546714\|ref\|NP_520116.1\| putative transmembrane succinate dehydrogenase (hydrophobic membrane an...	106.0	[0..3]	[115..9]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSNASALGR NGVHDFILVR ATAIVLTLYI IYMVGFFATS GELTYEVWIG FFASAFTKVF  60
   61 TLLALFSILI HAWIGMWQVL TDYVKPLALR LMLQLVIVVA LVVYVIYGFV VVWGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.221849
Match:	1nekD
Description:	Succinate dehydrogenase subunit SdhD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.441766869637855	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: