YRC Public Data Repository - Protein Structure Prediction

Protein:	SDHB_MOUSE
Organism:	Mus musculus
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDHB_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|12833468 - gi\|12833468\|dbj\|BAB22534.1\| unnamed protein product [Mus musculus]	304.0	[0..1]	[282..1]
SDHB_RAT - Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Rattus norvegicus GN=Sdhb...	303.0	[0..1]	[282..1]
gi\|57044796 - gi\|57044796\|ref\|XP_535392.1\| PREDICTED: similar to Succinate dehydrogenase [ubiquinone] iron-sulfur ...	300.0	[0..1]	[281..1]
gi\|114554304, gi... - gi\|114554304\|ref\|XP_001155457.1\| PREDICTED: succinate dehydrogenase complex, subunit B, iron sulfur ... SDHB - succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	299.0	[0..1]	[281..1]
SDHB_BOVIN - Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Bos taurus GN=SDHB PE=2 S...	298.0	[0..1]	[282..1]
gi\|665925, gi\|92... - gi\|9257242\|ref\|NP_002991.1\| succinate dehydrogenase complex, subunit B, iron sulfur (Ip) [Homo sapie...	298.0	[0..1]	[281..1]
SDHB_PIG - Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Sus scrofa GN=SDHB PE=1 S...	296.0	[0..1]	[282..1]
gi\|108998301 - gi\|108998301\|ref\|XP_001088349.1\| PREDICTED: succinate dehydrogenase complex, subunit B, iron sulfur ... gi\|90086177 - gi\|90086177\|dbj\|BAE91641.1\| unnamed protein product [Macaca fascicularis]	295.0	[0..1]	[281..1]

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Predicted Domain #1

Region A:
Residues: [1-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATVGVSLK RGFPAAVLGR VGLQFQACRG AQTAAAAAPR IKKFAIYRWD PDKTGDKPRM  60
   61 QTYEVDLNKC GPMVLDALIK IKNEVDSTLT FRRSCREGIC GSCAMNINGG NTLACTRRID 120
  121 TDLSKVSKIY PLPHMYVIKD LVPDLSNFYA QYKSIEPYLK KKDESQEGKQ QYLQSIEDRE 180
  181 KLDGLYECIL CACCSTSCPS YWWNGDKYLG PAVLMQAYRW MIDSRDDFTE ERLAKLQDPF 240
  241 SVYRCHTIMN CTQTCPKGLN PGKAIAEIKK MMATYKEKRA LA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.0
Match:	1yq3B
Description:	Avian respiratory complex ii with oxaloacetate and ubiquinone
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits