YRC Public Data Repository - Protein Structure Prediction

Protein:	DGOR_ECOLI
Organism:	Escherichia coli
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DGOR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|56420550, gi\|... - gi\|56420550\|ref\|YP_147868.1\| transcriptional regulator [Geobacillus kaustophilus HTA426], gi\|5638039...	175.0	[0..3]	[226..20]
gi\|134300032, gi... - gi\|88945079\|ref\|ZP_01148299.1\| regulatory protein GntR, HTH [Desulfotomaculum reducens MI-1], gi\|889...	168.0	[0..3]	[227..9]
gi\|78044814, gi\|... - gi\|78044814\|ref\|YP_359295.1\| GntR family transcriptional regulator [Carboxydothermus hydrogenoforman...	167.0	[0..2]	[227..8]
gi\|89334469, gi\|... - gi\|89895021\|ref\|YP_518508.1\| hypothetical protein DSY2275 [Desulfitobacterium hafniense Y51], gi\|893...	166.0	[0..2]	[226..12]
gi\|52081972, gi\|... - gi\|52787360\|ref\|YP_093189.1\| YvfI [Bacillus licheniformis ATCC 14580], gi\|52349862\|gb\|AAU42496.1\| Yv...	166.0	[0..2]	[226..8]
gi\|27367455, gi\|... - gi\|27367455\|ref\|NP_762982.1\| transcriptional regulator [Vibrio vulnificus CMCP6], gi\|27359024\|gb\|AAO... gi\|37201794, gi\|... - gi\|37677249\|ref\|NP_937645.1\| transcriptional regulator [Vibrio vulnificus YJ016], gi\|37201794\|dbj\|BA...	166.0	[0..6]	[229..18]
gi\|219669424, gi... - gi\|219669424\|ref\|YP_002459859.1\| GntR domain protein [Desulfitobacterium hafniense DCB-2], gi\|219539...	165.0	[0..2]	[226..8]
gi\|23097824, gi\|... - gi\|23097824\|ref\|NP_691290.1\| transcriptional regulator [Oceanobacillus iheyensis HTE831], gi\|2277604...	165.0	[0..2]	[227..8]
gi\|89048199, gi\|... - gi\|89076123\|ref\|ZP_01162482.1\| putative transcriptional regulatory protein [Photobacterium sp. SKA34...	164.0	[0..6]	[229..18]

Back

Predicted Domain #1

Region A:
Residues: [1-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLNKTDRIV ITLGKQIVHG KYVPGSPLPA EAELCEEFAT SRNIIREVFR SLMAKRLIEM  60
   61 KRYRGAFVAP RNQWNYLDTD VLQWVLENDY DPRLISAMSE VRNLVEPAIA RWAAERATSS 120
  121 DLAQIESALN EMIANNQDRE AFNEADIRYH EAVLQSVHNP VLQQLSIAIS SLQRAVFERT 180
  181 WMGDEANMPQ TLQEHKALFD AIRHQDGDAA EQAALTMIAS STRRLKEIT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	2di3A
Description:	No description for 2di3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits