YRC Public Data Repository - Protein Structure Prediction

Protein:	DGLA_STAXY
Organism:	Staphylococcus xylosus
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DGLA_STAXY.

Description	E-value	Query Range	Subject Range
gi\|73662519, gi\|... - gi\|73662519\|ref\|YP_301300.1\| hypothetical protein SSP1210 [Staphylococcus saprophyticus subsp. sapro...	143.0	[0..1]	[106..1]
gi\|242233719, gi... - gi\|242242818\|ref\|ZP_04797263.1\| protein of hypothetical function DUF77 [Staphylococcus epidermidis W... gi\|251805472, gi... - gi\|251810962\|ref\|ZP_04825435.1\| protein of hypothetical function DUF77 [Staphylococcus epidermidis B... gi\|57637729, gi\|... - gi\|57867071\|ref\|YP_188687.1\| hypothetical protein SERP1111 [Staphylococcus epidermidis RP62A], gi\|57... gi\|27315696, gi\|... - gi\|27468150\|ref\|NP_764787.1\| hypothetical protein SE1232 [Staphylococcus epidermidis ATCC 12228], gi...	142.0	[0..1]	[106..1]
gi\|25489859 - pir\|\|E83829 hypothetical protein BH1437 [imported] - Bacillus halodurans (strain C-125) gi\|10174054, gi\|... - gi\|15614000\|ref\|NP_242303.1\| hypothetical protein BH1437 [Bacillus halodurans C-125], gi\|10174054\|db...	140.0	[0..1]	[103..252]
gi\|56963504, gi\|... - gi\|56963504\|ref\|YP_175235.1\| hypothetical protein ABC1739 [Bacillus clausii KSM-K16], gi\|56909747\|db...	139.0	[0..1]	[101..249]
gi\|52081015, gi\|... - gi\|52786392\|ref\|YP_092221.1\| YqgV [Bacillus licheniformis ATCC 14580], gi\|52348894\|gb\|AAU41528.1\| Yq...	138.0	[0..1]	[103..1]
gi\|68447095, gi\|... - gi\|70726371\|ref\|YP_253285.1\| hypothetical protein SH1370 [Staphylococcus haemolyticus JCSC1435], gi\|...	136.0	[0..1]	[106..1]
gi\|87202911, gi\|... - gi\|88195353\|ref\|YP_500157.1\| hypothetical protein SAOUHSC_01645 [Staphylococcus aureus subsp. aureus... gi\|253314917 - gi\|253314917\|ref\|ZP_04838130.1\| hypothetical protein SauraC_01830 [Staphylococcus aureus subsp. aure... gi\|87161624, gi\|... - gi\|87161624\|ref\|YP_494201.1\| hypothetical protein SAUSA300_1506 [Staphylococcus aureus subsp. aureus... gi\|251801990, gi... - gi\|251814542\|ref\|ZP_04829015.1\| protein of hypothetical function DUF77 [Staphylococcus aureus subsp.... gi\|150374462, gi... - gi\|151221662\|ref\|YP_001332484.1\| hypothetical protein NWMN_1450 [Staphylococcus aureus subsp. aureus... gi\|227899942, gi... - gi\|227899942\|ref\|ZP_04017747.1\| protein of hypothetical function DUF77 [Staphylococcus aureus subsp.... gi\|156979864, gi... - gi\|156979864\|ref\|YP_001442123.1\| hypothetical protein SAHV_1533 [Staphylococcus aureus subsp. aureus... gi\|227245876, gi... - gi\|227557744\|ref\|ZP_03987791.1\| protein of hypothetical function DUF77 [Staphylococcus aureus subsp.... gi\|87161624\|ref\|... - conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300], hypothetical protein SA... gi\|57651939, gi\|... - gi\|57651939\|ref\|YP_186443.1\| hypothetical protein SACOL1603 [Staphylococcus aureus subsp. aureus COL... gi\|21283227, gi\|... - gi\|21283227\|ref\|NP_646315.1\| hypothetical protein MW1498 [Staphylococcus aureus subsp. aureus MW2], ... gi\|90582233, gi\|... - gi\|90582233\|ref\|ZP_01237997.1\| Protein of unknown function DUF77 [Staphylococcus aureus subsp. aureu... gi\|49483795, gi\|... - gi\|49483795\|ref\|YP_041019.1\| hypothetical protein SAR1623 [Staphylococcus aureus subsp. aureus MRSA2... gi\|147741099, gi... - gi\|90585160\|ref\|ZP_01240871.1\| Protein of unknown function DUF77 [Staphylococcus aureus subsp. aureu... gi\|25328802 - pir\|\|A89935 conserved hypothetical protein SA1376 [imported] - Staphylococcus aureus (strain N315) gi\|161509775, gi... - gi\|161509775\|ref\|YP_001575434.1\| hypothetical protein USA300HOU_1548 [Staphylococcus aureus subsp. a... gi\|13701344, gi\|... - gi\|15927126\|ref\|NP_374659.1\| hypothetical protein SA1376 [Staphylococcus aureus subsp. aureus N315],... gi\|49244825, gi\|... - gi\|49486382\|ref\|YP_043603.1\| hypothetical protein SAS1484 [Staphylococcus aureus subsp. aureus MSSA4... gi\|15924536, gi\|... - gi\|15924536\|ref\|NP_372070.1\| hypothetical protein SAV1546 [Staphylococcus aureus subsp. aureus Mu50]... gi\|221137855 - gi\|221137855\|ref\|ZP_03562657.1\| hypothetical protein SauraJK_04223 [Staphylococcus aureus subsp. aur... gi\|221140034 - gi\|221140034\|ref\|ZP_03564527.1\| hypothetical protein SauraJ_00190 [Staphylococcus aureus subsp. aure... gi\|269203174\|ref... - hypothetical protein SAAV_1538 [Staphylococcus aureus subsp. aureus ED98] gi\|255006332 - gi\|255006332\|ref\|ZP_05144933.2\| hypothetical protein SauraM_07685 [Staphylococcus aureus subsp. aure... gi\|253733204, gi... - gi\|253733204\|ref\|ZP_04867369.1\| protein of hypothetical function DUF77 [Staphylococcus aureus subsp.... gi\|253723988, gi... - gi\|253732199\|ref\|ZP_04866364.1\| protein of hypothetical function DUF77 [Staphylococcus aureus subsp....	136.0	[0..1]	[106..1]
gi\|82656680, gi\|... - gi\|82751149\|ref\|YP_416890.1\| hypothetical protein SAB1418c [Staphylococcus aureus RF122], gi\|8265668...	134.0	[0..1]	[106..1]
gi\|83574227, gi\|... - gi\|83591313\|ref\|YP_431322.1\| hypothetical protein Moth_2497 [Moorella thermoacetica ATCC 39073], gi\|...	133.0	[0..1]	[103..1]
gi\|78700337, gi\|... - gi\|78700337\|ref\|ZP_00864794.1\| Protein of unknown function DUF77 [Alkalilimnicola ehrlichei MLHE-1],...	131.0	[0..2]	[105..3]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIVDVVVIP VGTDGPSVSK YIAEIQTKLK EYKAQGKIDY QLTPMNTLIE GDLKDLFEVV  60
   61 QAIHELPFDK GLSRVCTNIR IDDRRDKSRN MNEKVKAVEK YLNDGGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.39794
Match:	1lxjA
Description:	Hypothetical protein YB1001C
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits