YRC Public Data Repository - Protein Structure Prediction

Protein:	IPI:IPI00700845....
Organism:	Bos taurus
Length:	52 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IPI:IPI00700845.....

Description	E-value	Query Range	Subject Range
gi\|68395792, gi\|... - gi\|68395794\|ref\|XP_706728.1\| PREDICTED: similar to phospholamban isoform 2 [Danio rerio], gi\|6839579...	61.0	[0..1]	[36..1]
gi\|47226825 - gi\|47226825\|emb\|CAG06667.1\| unnamed protein product [Tetraodon nigroviridis]	58.0	[0..1]	[36..1]
ENSCJAT00000008095 - null PPLA_RAT - Cardiac phospholamban OS=Rattus norvegicus GN=Pln PE=1 SV=1 tr\|M3W4A6\|M3W4A6... - Cardiac phospholamban OS=Felis catus GN=PLN PE=3 SV=1 ENSMMUT000000312... - null, null gi\|149722912 - gi\|149722912\|ref\|XP_001504215.1\| PREDICTED: similar to Cardiac phospholamban (PLB) [Equus caballus] PPLA_MOUSE - Cardiac phospholamban OS=Mus musculus GN=Pln PE=1 SV=1 gi\|257746 - gi\|257746\|gb\|AAB23706.1\| phospholamban [Mus sp.] gi\|26986719, gi\|... - gi\|26986719\|gb\|AAN86727.1\| phospholamban [Rattus sp.], gi\|247933\|gb\|AAB21903.1\| phospholamban; PLN [... PPLA_RABIT - Cardiac phospholamban OS=Oryctolagus cuniculus GN=PLN PE=1 SV=1	52.0	[0..1]	[52..1]
PPLA_CHICK - Cardiac phospholamban OS=Gallus gallus GN=PLN PE=2 SV=1	51.0	[0..1]	[52..1]
PLN - phospholamban gi\|123991820, gi... - gi\|208968653\|dbj\|BAG74165.1\| phospholamban [synthetic construct], gi\|123999126\|gb\|ABM87145.1\| phosph...	50.0	[0..1]	[52..1]
gi\|71042830, gi\|... - gi\|71042830\|pdb\|1FJP\|A Chain A, Nmr Solution Structure Of Phospholamban (C41f), gi\|10120550\|pdb\|1FJK...	49.0	[0..1]	[52..1]
gi\|38492528 - gi\|38492528\|pdb\|1N7L\|A Chain A, Solution Nmr Structure Of Phospholamban In Detergent Micelles gi\|240104229 - gi\|240104229\|pdb\|2KB7\|P Chain P, Hybrid Solution And Solid-State Nmr Structure Of Monomeric Phosphol...	49.0	[0..1]	[52..2]

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Predicted Domain #1

Region A:
Residues: [1-52]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKVQYLTRS AIRRASTIEM PQQARQNLQN LFINFCLILI CLLLICIIVM LL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.0
Match:	1zllA
Description:	NMR Structure of Unphosphorylated Human Phospholamban Pentamer
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits