YRC Public Data Repository - Protein Structure Prediction

Protein:	DFX_DESDE, DESR_...
Organism:	Desulfovibrio desulfuricans
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DFX_DESDE, DESR_....

Description	E-value	Query Range	Subject Range
gi\|93451530, gi\|... - gi\|94268618\|ref\|ZP_01291234.1\| Desulfoferrodoxin [delta proteobacterium MLMS-1], gi\|94264843\|ref\|ZP_...	204.0	[0..2]	[123..3]
gi\|67980851, gi\|... - gi\|95929752\|ref\|ZP_01312493.1\| desulfoferrodoxin [Desulfuromonas acetoxidans DSM 684], gi\|95134048\|g...	202.0	[0..3]	[124..4]
DFX_DESVH - Desulfoferrodoxin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=dfx ... gi\|241878479, gi... - gi\|241909146\|ref\|ZP_04793699.1\| desulfoferrodoxin [Desulfovibrio vulgaris RCH1], gi\|241878479\|gb\|EER... gi\|66409, gi\|145... - gi\|758676\|gb\|AAA64797.1\| rubredoxin oxidoreductase [Desulfovibrio vulgaris str. Hildenborough], pir\|... gi\|120601255, gi... - gi\|120601255\|ref\|YP_965655.1\| desulfoferrodoxin [Desulfovibrio vulgaris subsp. vulgaris DP4], gi\|120...	199.0	[0..1]	[124..2]
gi\|146297044, gi... - gi\|82499025\|ref\|ZP_00884477.1\| Desulfoferrodoxin, ferrous iron-binding region:Desulfoferrodoxin Dfx:...	197.0	[0..2]	[124..3]
DFX_DESBR, DESR_... - Desulfoferrodoxin OS=Desulfoarculus baarsii GN=dfx PE=1 SV=3, (Q46495) Desulfoferrodoxin (EC 1.15.-.... DFX_DESBR - Desulfoferrodoxin OS=Desulfarculus baarsii GN=dfx PE=1 SV=3 DFX_DESB2 - Desulfoferrodoxin OS=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) GN=df...	195.0	[0..1]	[125..2]
gi\|1020403 - gi\|1020403\|dbj\|BAA11174.1\| desulfoferrodoxin [Desulfovibrio vulgaris] DFX_DESVM - Desulfoferrodoxin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=dfx PE=3 SV=2	192.0	[0..1]	[123..2]
gi\|71836900, gi\|... - gi\|71836900\|ref\|ZP_00676667.1\| Desulfoferrodoxin, ferrous iron-binding region:Desulfoferrodoxin Dfx:...	191.0	[0..2]	[124..3]
DFX_PELCD - Desulfoferrodoxin OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=dfx PE=3 SV=1	191.0	[0..2]	[124..3]
DFX_DESAG - Desulfoferrodoxin OS=Desulfovibrio alaskensis (strain G20) GN=dfx PE=3 SV=1	191.0	[0..1]	[124..2]

Back

Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKHLEVYKCT HCGNIVEVLH GGGAELVCCG EPMKHMVEGS TDGAMEKHVP VIEKVDGGYL  60
   61 IKVGSVPHPM EEKHWIEWIE LLADGRSYTK FLKPGDAPEA FFAIDASKVT AREYCNLHGH 120
  121 WKAEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.30103
Match:	1dfxA
Description:	DESULFOFERRODOXIN FROM DESULFOVIBRIO DESULFURICANS, ATCC 27774
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits