YRC Public Data Repository - Protein Structure Prediction

Protein:	DCUR_ECOLI
Organism:	Escherichia coli
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DCUR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|98660701 - gi\|98660701\|dbj\|GAA02123.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	219.0	[0..3]	[230..106]
gi\|10175779, gi\|... - gi\|15615719\|ref\|NP_244023.1\| two-component response regulator involved in phosphate regulation [Baci... gi\|25300880 - pir\|\|E84044 two-component response regulator involved in phosphate regulation phoP [imported] - Baci...	218.0	[0..3]	[230..4]
gi\|229497231, gi... - gi\|229497231\|ref\|ZP_04390932.1\| two component transcriptional regulator, winged helix family [Geobac... gi\|56421267, gi\|... - gi\|56421267\|ref\|YP_148585.1\| two-component response regulator (phosphate regulation) [Geobacillus ka... gi\|221088131, gi... - gi\|221088131\|ref\|ZP_03557664.1\| two component transcriptional regulator, winged helix family [Geobac...	215.0	[0..3]	[233..4]
gi\|4982229, gi\|1... - gi\|4982229\|gb\|AAD36722.1\|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8], gi\|15644403... gi\|7444020 - pir\|\|D72228 response regulator DrrA - Thermotoga maritima (strain MSB8)	214.0	[0..3]	[230..13]
gi\|83588943, gi\|... - gi\|83588943\|ref\|YP_428952.1\| two component transcriptional regulator [Moorella thermoacetica ATCC 39...	213.0	[0..3]	[228..6]
gi\|89203634, gi\|... - gi\|89203634\|ref\|ZP_01182248.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter...	213.0	[0..2]	[233..4]
gi\|85859021, gi\|... - gi\|85859021\|ref\|YP_461223.1\| response regulator [Syntrophus aciditrophicus SB], gi\|85722112\|gb\|ABC77...	212.0	[0..3]	[228..16]
gi\|1575577 - gi\|1575577\|gb\|AAC44436.1\| DNA-binding response regulator [Thermotoga maritima]	212.0	[0..3]	[230..5]
gi\|82502198 - gi\|82502198\|gb\|ABB80126.1\| SubR [Bacillus subtilis]	212.0	[0..2]	[232..4]
gi\|56910719, gi\|... - gi\|56964476\|ref\|YP_176207.1\| two-component response regulator of alkaline phosphatase synthesis [Bac...	212.0	[0..3]	[229..4]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINVLIIDDD AMVAELNRRY VAQIPGFQCC GTASTLEKAK EIIFNSDTPI DLILLDIYMQ  60
   61 KENGLDLLPV LHNARCKSDV IVISSAADAA TIKDSLHYGV VDYLIKPFQA SRFEEALTGW 120
  121 RQKKMALEKH QYYDQAELDQ LIHGSSSNEQ DPRRLPKGLT PQTLRTLCQW IDAHQDYEFS 180
  181 TDELANEVNI SRVSCRKYLI WLVNCHILFT SIHYGVTGRP VYRYRIQAEH YSLLKQYCQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.522879
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits