YRC Public Data Repository - Protein Structure Prediction

Protein:	DAPA_CAUCR
Organism:	Caulobacter vibrioides
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAPA_CAUCR.

Description	E-value	Query Range	Subject Range
DAPA_GEOUR - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter uraniireducens (strain Rf4) GN=dapA PE=3 SV=1	374.0	[0..5]	[293..1]
DAPA_GEOMG - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / ...	371.0	[0..5]	[293..1]
gi\|241906440, gi... - gi\|241906440\|ref\|ZP_04791022.1\| dihydrodipicolinate synthase [Desulfovibrio vulgaris RCH1], gi\|24188... DAPA_DESVV - 4-hydroxy-tetrahydrodipicolinate synthase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=... DAPA_DESVH - 4-hydroxy-tetrahydrodipicolinate synthase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 295...	369.0	[0..6]	[293..3]
DAPA_GEOSL - Dihydrodipicolinate synthase OS=Geobacter sulfurreducens GN=dapA PE=3 SV=1 DAPA_GEOSL - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127...	369.0	[0..5]	[293..1]
DAPA_BARBK - 4-hydroxy-tetrahydrodipicolinate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN...	367.0	[0..5]	[293..1]
DAPA_AQUAE - Dihydrodipicolinate synthase OS=Aquifex aeolicus GN=dapA PE=1 SV=1 DAPA_AQUAE - 4-hydroxy-tetrahydrodipicolinate synthase OS=Aquifex aeolicus (strain VF5) GN=dapA PE=1 SV=1	365.0	[0..5]	[293..1]
gi\|91202476 - gi\|91202476\|emb\|CAJ72115.1\| strongly similar to dihydropicolinate synthase (DHDPS) [Candidatus Kuene...	364.0	[0..5]	[293..1]
gi\|71739774, gi\|... - gi\|71839778\|ref\|ZP_00679520.1\| Dihydrodipicolinate synthase subfamily [Pelobacter propionicus DSM 23...	363.0	[0..4]	[293..9]
DAPA_METJA - Dihydrodipicolinate synthase OS=Methanocaldococcus jannaschii GN=dapA PE=1 SV=1 DAPA_METJA - 4-hydroxy-tetrahydrodipicolinate synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM ...	363.0	[0..5]	[293..1]
DAPA_GEODF - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-...	363.0	[0..5]	[293..1]

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Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQSHFKGVI PALVTPFRDG EVDEKAFVAL VERQIAGGVH GLVPVGTTGE TSTLSHEEHR  60
   61 RVVELCVKTT AGRVPVIAGA GSNSTDEAIE LARHAKTVGA DACLVVTPYY NRPSQEGMYQ 120
  121 HYKAINDAVE LPIFVYNVPG RTGVDISNDT LERLAKLPNI VGIKDATGDL TRISFQRLMC 180
  181 GPEWVMLSGD DPTALGYMAH GGHGVISVTS NVAPDACSAF MNACMQGEWE KGLYWQDRLV 240
  241 RLHKALFLDS SPAPTKFAMA QLGLCTEDVR LPITACAEGV RPAILEAMRE AGLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	2ehhA
Description:	No description for 2ehhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits