YRC Public Data Repository - Protein Structure Prediction

Protein:	DAPA_AQUAE
Organism:	Aquifex aeolicus
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAPA_AQUAE.

Description	E-value	Query Range	Subject Range
gi\|241906440, gi... - gi\|241906440\|ref\|ZP_04791022.1\| dihydrodipicolinate synthase [Desulfovibrio vulgaris RCH1], gi\|24188... DAPA_DESVV - 4-hydroxy-tetrahydrodipicolinate synthase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=... DAPA_DESVH - 4-hydroxy-tetrahydrodipicolinate synthase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 295...	370.0	[0..2]	[291..3]
DAPA_METJA - Dihydrodipicolinate synthase OS=Methanocaldococcus jannaschii GN=dapA PE=1 SV=1 DAPA_METJA - 4-hydroxy-tetrahydrodipicolinate synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM ...	366.0	[0..1]	[290..1]
DAPA_GEOUR - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter uraniireducens (strain Rf4) GN=dapA PE=3 SV=1	366.0	[0..1]	[290..1]
DAPA_BARBK - 4-hydroxy-tetrahydrodipicolinate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN...	365.0	[0..1]	[290..1]
DAPA_GEOMG - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / ...	365.0	[0..1]	[290..1]
DAPA_GEOSL - Dihydrodipicolinate synthase OS=Geobacter sulfurreducens GN=dapA PE=3 SV=1 DAPA_GEOSL - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127...	362.0	[0..1]	[290..1]
DAPA_METKA - Dihydrodipicolinate synthase OS=Methanopyrus kandleri GN=dapA PE=3 SV=1 DAPA_METKA - 4-hydroxy-tetrahydrodipicolinate synthase OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 963...	360.0	[0..3]	[291..6]
gi\|91202476 - gi\|91202476\|emb\|CAJ72115.1\| strongly similar to dihydropicolinate synthase (DHDPS) [Candidatus Kuene...	358.0	[0..1]	[291..1]
DAPA_GEODF - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-...	357.0	[0..1]	[290..1]
gi\|71739774, gi\|... - gi\|71839778\|ref\|ZP_00679520.1\| Dihydrodipicolinate synthase subfamily [Pelobacter propionicus DSM 23...	355.0	[0..1]	[290..10]

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Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQGSIVALI TPFKEGEVDY EALGNLIEFH VDNGTDAILV CGTTGESPTL TFEEHEKVIE  60
   61 FAVKRAAGRI KVIAGTGGNA THEAVHLTAH AKEVGADGAL VVVPYYNKPT QRGLYEHFKT 120
  121 VAQEVDIPII IYNIPSRTCV EISVDTMFKL ASECENIVAS KESTPNMDRI SEIVKRLGES 180
  181 FSVLSGDDSL TLPMMALGAK GVISVANNVM PREVKELIRA ALEGDFRRAR EIHYYLHDLF 240
  241 KVLFIETNPI PVKTACWMLG MCEKEFRLPL TEMSPENENK LREVLKKYNL PLKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	104.0
Match:	2ehhA
Description:	No description for 2ehhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits