YRC Public Data Repository - Protein Structure Prediction

Protein:	DAD1_CHICK
Organism:	Gallus gallus
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAD1_CHICK.

Description	E-value	Query Range	Subject Range
gi\|110769776 - gi\|110769776\|ref\|XP_001123277.1\| PREDICTED: similar to CG13393-PA [Apis mellifera]	167.0	[0..14]	[123..2]
gi\|1905979 - gi\|1905979\|gb\|AAC53098.1\| oligosaccharyltransferase subunit homolog [Mus musculus]	165.0	[0..12]	[123..2]
DAD1_MESAU - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Mesocricetus auratus ... gi\|114652018 - gi\|114652018\|ref\|XP_509838.2\| PREDICTED: similar to DAD-1 [Pan troglodytes] ENSCJAT00000016915 - null gi\|61363160, gi\|... - gi\|61363160\|gb\|AAX42345.1\| defender against cell death 1 [synthetic construct], gi\|60819691\|gb\|AAX36... gi\|149756188 - gi\|149756188\|ref\|XP_001500228.1\| PREDICTED: similar to defender against cell death 1 [Equus caballus... ENSOCUP000000122... - pep:novel chromosome:oryCun2:17:42840686:42870057:-1 gene:ENSOCUG00000014269 transcript:ENSOCUT00000... tr\|G3HRC5\|G3HRC5... - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Cricetulus griseus GN... tr\|M3X9E1\|M3X9E1... - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Felis catus GN=DAD1 P... DAD1 - defender against cell death 1 DAD1_RAT - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Rattus norvegicus GN=... CCDS9571.1_1 - null gi\|109082853 - gi\|109082853\|ref\|XP_001099561.1\| PREDICTED: similar to defender against cell death 1 [Macaca mulatta... DAD1_MOUSE - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Mus musculus GN=Dad1 ...	165.0	[0..12]	[123..2]
gi\|73962567 - gi\|73962567\|ref\|XP_537361.2\| PREDICTED: similar to defender against cell death 1 [Canis familiaris]	165.0	[0..12]	[123..2]
DAD1_BOVIN - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Bos taurus GN=DAD1 PE...	165.0	[0..12]	[123..2]
gi\|60652889, gi\|... - gi\|60831017\|gb\|AAX36954.1\| defender against cell death 1 [synthetic construct], gi\|60654189\|gb\|AAX29...	165.0	[0..12]	[123..2]
DAD1_PIG - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Sus scrofa GN=DAD1 PE...	165.0	[0..12]	[123..2]
gi\|91093935 - gi\|91093935\|ref\|XP_966764.1\| PREDICTED: similar to CG13393 CG13393-PA [Tribolium castaneum]	165.0	[0..14]	[123..3]
gi\|47228101 - gi\|47228101\|emb\|CAF97730.1\| unnamed protein product [Tetraodon nigroviridis]	164.0	[0..12]	[123..2]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGTAGSGVG AAGSVGSVVR RFLAEYGSGT SSRLKVLDAY LLYVMLTGAL QFGYCLGVGT  60
   61 FPFNSFLSGF ISAVGSFILG VCLRIQINPQ NKGEFQGISP ERAFADFLFA NTILHLVVIN 120
  121 FVG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	80.522879
Match:	PF02109.7
Description:	No description for PF02109.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.973	N/A	N/A	a.24.3	Cytochromes

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits