YRC Public Data Repository - Protein Structure Prediction

Protein:	CYTB_PIG
Organism:	Sus scrofa
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYTB_PIG.

Description	E-value	Query Range	Subject Range
gi\|109494457 - gi\|109494457\|ref\|XP_001070830.1\| PREDICTED: similar to stefin A2 like 1 [Rattus norvegicus]	165.0	[0..4]	[98..10]
gi\|76608397 - gi\|76608397\|ref\|XP_591975.2\| PREDICTED: similar to Cystatin B (Liver thiol proteinase inhibitor) (CP...	165.0	[0..3]	[98..133]
gi\|127140962, gi... - gi\|94401232\|ref\|XP_998728.1\| PREDICTED: similar to cystatin A [Mus musculus], gi\|82965740\|ref\|XP_920...	164.0	[0..1]	[98..1]
gi\|50729385 - gi\|50729385\|ref\|XP_416492.1\| PREDICTED: similar to cystatin B [Gallus gallus]	163.0	[0..1]	[98..1]
gi\|30584379, gi\|... - gi\|61370525\|gb\|AAX43510.1\| cystatin B [synthetic construct], gi\|61370519\|gb\|AAX43509.1\| cystatin B [...	163.0	[0..1]	[98..1]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMCGAPSATQ PATAEIQAIA DKVKSQLEEK ENKTFPVFKA VEFKSQVVAG RNLFIKVQVD  60
   61 DDDFVHLRVF ESLPHENKPL TLSSYQTNKS RHDELTYF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.09691
Match:	1stfI
Description:	Cystatin B (stefin B)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits