YRC Public Data Repository - Protein Structure Prediction

Protein:	CYTA_SARPE
Organism:	Sarcophaga peregrina
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYTA_SARPE.

Description	E-value	Query Range	Subject Range
CYT6_ARATH - Cysteine proteinase inhibitor 6 OS=Arabidopsis thaliana GN=CYS6 PE=1 SV=2	132.0	[0..1]	[121..2]
gi\|18874516 - gi\|18874516\|gb\|AAL79831.1\|AF469485_1 cystatin [Sandersonia aurantiaca]	131.0	[0..23]	[121..4]
gi\|809608, gi\|10... - gi\|809608\|emb\|CAA60610.1\| cysteine proteinase inhibitor [Zea mays], pir\|\|S54828 cysteine proteinase ...	131.0	[0..14]	[116..31]
gi\|12657579 - gi\|12657579\|dbj\|BAB21558.1\| cystatin [Coix lacryma-jobi]	130.0	[0..14]	[116..32]
gi\|65306458 - gi\|65306458\|gb\|AAY41807.1\| cysteine proteinase inhibitor [Populus tomentosa]	130.0	[0..4]	[121..10]
gi\|52851108 - gi\|52851108\|emb\|CAH57557.1\| cysteine protease inhibitor [Populus tremula]	129.0	[0..4]	[121..10]
gi\|66866421 - gi\|66866421\|gb\|AAY57859.1\| cysteine proteinase inhibitor [Zea mays subsp. parviglumis]	129.0	[0..14]	[113..31]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYVLILCVI TLATVAYAQP QCVGCPSEVK GDKLKQSEET LNKSLSKLAA GDGPTYKLVK  60
   61 INSATTQVVS GSKDVINADL KDENDKTKTC DITIWSQPWL ENGIEVTFNC PGEPKVVKKH 120
  121 SA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	1eqkA
Description:	Phytocystatin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits