YRC Public Data Repository - Protein Structure Prediction

Protein:	CYOE_ECOLI
Organism:	Escherichia coli
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYOE_ECOLI.

Description	E-value	Query Range	Subject Range
3825.m02509, 128... - /numExons=12 /strand=- /begin=98461 /end=104446 /seqFile=euttg.scaffolds.fasta /startCodon=0 /coords... gi\|89295687, gi\|... - gi\|89295687\|gb\|EAR93675.1\| 4-hydroxybenzoate polyprenyl transferase family protein [Tetrahymena ther...	203.0	[0..2]	[286..975]
gi\|68202151, gi\|... - gi\|68230245\|ref\|ZP_00569431.1\| Protoheme IX farnesyltransferase [Frankia sp. EAN1pec], gi\|68202151\|g...	200.0	[0..4]	[271..236]
gi\|73956024 - gi\|73956024\|ref\|XP_546634.2\| PREDICTED: similar to heme A:farnesyltransferase [Canis familiaris]	189.0	[0..5]	[268..499]
gi\|46100862, gi\|... - gi\|71023219\|ref\|XP_761839.1\| hypothetical protein UM05692.1 [Ustilago maydis 521], ref\|XP_403307.1\| ...	188.0	[0..4]	[296..1214]
gi\|85837310, gi\|... - gi\|86144411\|ref\|ZP_01062743.1\| protoheme IX farnesyltransferase [Vibrio sp. MED222], gi\|85837310\|gb\|...	186.0	[0..2]	[285..41]
gi\|124506307, gi... - gi\|23613216\|ref\|NP_703538.1\| cytochrome c oxidase assembly protein (heme A: farnesyltransferase), pu...	185.0	[0..14]	[289..327]
gi\|62179051, gi\|... - gi\|62179051\|ref\|YP_215468.1\| protoheme IX farnesyltransferase [Salmonella enterica subsp. enterica s...	184.0	[0..1]	[296..16]
gi\|84387586, gi\|... - gi\|84387586\|ref\|ZP_00990604.1\| protoheme IX farnesyltransferase [Vibrio splendidus 12B01], gi\|843776...	184.0	[0..2]	[285..41]
gi\|186468034, gi... - gi\|23128782\|ref\|ZP_00110621.1\| COG0109: Polyprenyltransferase (cytochrome oxidase assembly factor) [...	183.0	[0..2]	[295..16]
gi\|115397897, gi... - gi\|115397897\|ref\|XP_001214540.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	183.0	[0..2]	[296..156]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMFKQYLQVT KPGIIFGNLI SVIGGFLLAS KGSIDYPLFI YTLVGVSLVV ASGCVFNNYI  60
   61 DRDIDRKMER TKNRVLVKGL ISPAVSLVYA TLLGIAGFML LWFGANPLAC WLGVMGFVVY 120
  121 VGVYSLYMKR HSVYGTLIGS LSGAAPPVIG YCAVTGE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [158-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDSGAAILLA IFSLWQMPHS YAIAIFRFKD YQAANIPVLP VVKGISVAKN HITLYIIAFA  60
   61 VATLMLSLGG YAGYKYLVVA AAVSVWWLGM ALRGYKVADD RIWARKLFGF SIIAITALSV 120
  121 MMSVDFMVPD SHTLLAAVW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits