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View Structure Prediction Details

Protein: CYC_MIRLE
Organism: Mirounga leonina
Length: 104 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYC_MIRLE.

Description E-value Query
Range
Subject
Range
gi|229351 - gi|229351|prf||711086A cytochrome c
147.0 [0..1] [104..1]
CYC_SCHGR - (P00040) Cytochrome c
146.0 [0..1] [103..5]
CYC_CYPCA - (P00026) Cytochrome c iso-1/iso-2
146.0 [0..1] [102..1]
CYC_HIPAM - (P00007) Cytochrome c
145.0 [0..1] [104..1]
gi|30178199, gi|... - gi|31202411|ref|XP_310154.1| AGAP009537-PA [Anopheles gambiae str. PEST], gi|30178199|gb|EAA05914.2|...
AGAP009537-PA - cytochrome c|protein_coding|3R:35606586:35606912:1|gene:AGAP009537
145.0 [0..1] [103..6]
gi|89272026 - gi|89272026|emb|CAJ83237.1| cytochrome c, somatic [Xenopus tropicalis]
145.0 [0..1] [104..9]
CYC_CANFA - (P00011) Cytochrome c
145.0 [0..1] [104..1]
CYC_DANRE - Cytochrome c OS=Danio rerio GN=cyc PE=3 SV=3
145.0 [0..1] [102..2]

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Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDVEKGKKIF VQKCAQCHTV EKGGKHKTGP NLHGLFGRKT GQAPGFSYTD ANKNKGITWG  60
   61 EETLMEYLEN PKKYIPGTKM IFAGIKKTGE RADLIAYLKI ATKE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.39794
Match: 1akkA
Description: SOLUTION STRUCTURE OF OXIDIZED HORSE HEART CYTOCHROME C, NMR, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle