YRC Public Data Repository - Protein Structure Prediction

Protein:	CYC_HIPAM
Organism:	Hippopotamus amphibius
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYC_HIPAM.

Description	E-value	Query Range	Subject Range
gi\|229351 - gi\|229351\|prf\|\|711086A cytochrome c	146.0	[0..1]	[104..1]
gi\|89272026 - gi\|89272026\|emb\|CAJ83237.1\| cytochrome c, somatic [Xenopus tropicalis]	146.0	[0..1]	[104..9]
CYC_SCHGR - (P00040) Cytochrome c	146.0	[0..1]	[103..5]
CYC_CYPCA - (P00026) Cytochrome c iso-1/iso-2	146.0	[0..1]	[103..1]
CYC_LAMTR - (P00028) Cytochrome c	145.0	[0..1]	[104..1]
gi\|4139756, gi\|1... - gi\|809143\|pdb\|1HRC\| Chain , Cytochrome C, gi\|4139756\|pdb\|1WEJ\|F Chain F, Igg1 Fab Fragment (Of E8 ...	144.0	[0..1]	[104..2]
CYC_DANRE - Cytochrome c OS=Danio rerio GN=cyc PE=3 SV=3	144.0	[0..1]	[103..2]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDVEKGKKIF VQKCAQCHTV EKGGKHKTGP NLHGLFGRKT GQSPGFSYTD ANKNKGITWG  60
   61 EETLMEYLEN PKKYIPGTKM IFAGIKKKGE RADLIAYLKQ ATNE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.30103
Match:	1akkA
Description:	SOLUTION STRUCTURE OF OXIDIZED HORSE HEART CYTOCHROME C, NMR, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits