YRC Public Data Repository - Protein Structure Prediction

Protein:	CYB5_TOBAC
Organism:	Nicotiana tabacum
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYB5_TOBAC.

Description	E-value	Query Range	Subject Range
gi\|1076621, gi\|2... - gi\|296386\|emb\|CAA50575.1\| cytochrome b5 [Nicotiana tabacum], gi\|1076621\|pir\|\|S46306 cytochrome b5 - ...	167.0	[0..1]	[136..4]
gi\|50844675 - gi\|50844675\|gb\|AAT84459.1\| cytochrome b5 isoform Cb5-B [Vernicia fordii]	163.0	[0..1]	[133..1]
gi\|125550542 - gi\|125550542\|gb\|EAY96251.1\| hypothetical protein OsI_18149 [Oryza sativa Indica Group] CYB5_ORYSJ - Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2 CYB5_ORYSA - Cytochrome b5 - Oryza sativa (Rice)	160.0	[0..1]	[136..1]
CYB5B_ARATH - Cytochrome b5 isoform B OS=Arabidopsis thaliana GN=CYTB5-B PE=1 SV=1	160.0	[0..1]	[133..1]
CYB5_ORYSA - (P49100) Cytochrome b5	160.0	[0..1]	[136..1]
gi\|25044825 - gi\|25044825\|gb\|AAM28288.1\| cytochrome b5 [Ananas comosus]	154.0	[0..1]	[134..1]
CYB5_BOROF - Cytochrome b5 OS=Borago officinalis PE=2 SV=1	154.0	[0..6]	[134..3]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGETKVFTL AEVSQHNNAK DCWLVISGKV YDVTKFLDDH PGGDEVLLSA TGKDATDDFE  60
   61 DVGHSSSARA MLDEYYVGDI DSATIPTKTK YTPPNQPHYN QDKTSEFVVK LLQFLVPLII 120
  121 LGVAFGIRFY TKQSSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.30103
Match:	1fcbA
Description:	Flavocytochrome b2, C-terminal domain; Flavocytochrome b2, N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits