YRC Public Data Repository - Protein Structure Prediction

Protein:	CYB5_MUSDO
Organism:	Musca domestica
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYB5_MUSDO.

Description	E-value	Query Range	Subject Range
gi\|220948800, gi... - gi\|220958220\|gb\|ACL91653.1\| Cyt-b5-PB [synthetic construct], gi\|220948800\|gb\|ACL86943.1\| Cyt-b5-PB [... Cyt-b5-PB - The gene Cyt-b5 is referred to in FlyBase by the symbol Dmel\Cyt-b5 (CG2140, FBgn0033189). It is a p...	161.0	[0..1]	[134..1]
gi\|54636572, gi\|... - gi\|54636572\|gb\|EAL25975.1\| GA15264-PA [Drosophila pseudoobscura], gi\|125810204\|ref\|XP_001361397.1\| G...	160.0	[0..1]	[134..1]
gi\|1613840 - gi\|1613840\|gb\|AAB16807.1\| cytochrome b5 [Mesocricetus auratus]	152.0	[0..2]	[132..5]
gi\|68438685 - gi\|68438685\|ref\|XP_698851.1\| PREDICTED: similar to cytochrome b5 [Danio rerio]	148.0	[0..3]	[130..8]
gi\|11177032 - gi\|11177032\|dbj\|BAB17854.1\| cytochrome b5 [Ciona savignyi]	147.0	[0..1]	[131..1]
gi\|89272063, gi\|... - gi\|89272063\|emb\|CAJ82840.1\| cytochrome b-5 [Xenopus tropicalis], gi\|62857471\|ref\|NP_001015979.1\| hyp...	147.0	[0..1]	[132..1]
gi\|109122478 - gi\|109122478\|ref\|XP_001083378.1\| PREDICTED: similar to Cytochrome b5 [Macaca mulatta]	146.0	[0..2]	[130..5]
gi\|53136458, gi\|... - gi\|71895491\|ref\|NP_001025752.1\| outer mitochondrial membrane cytochrome b5 [Gallus gallus], gi\|53136...	145.0	[0..3]	[128..15]
gi\|241701683, gi... - gi\|241701683\|ref\|XP_002413177.1\| cytochrome B5, putative [Ixodes scapularis], gi\|215506991\|gb\|EEC164... gi\|51011616 - gi\|51011616\|gb\|AAT92217.1\| cytochrome b5 [Ixodes pacificus]	145.0	[0..1]	[133..1]

Back

Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEDVKYFT RAEVAKNNTK DKNWFIIHNN VYDVTAFLNE HPGGEEVLIE QAGKDATEHF  60
   61 EDVGHSSDAR EMMKQYKVGE LVAEERSNVP EKSEPTWNTE QKTEESSMKS WLMPFVLGLV 120
  121 ATLIYKFFFG TKSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	2ibjA
Description:	No description for 2ibjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits