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View Structure Prediction Details

Protein: COX8A_TRACR
Organism: Trachypithecus cristatus
Length: 69 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX8A_TRACR.

Description E-value Query
Range
Subject
Range
COX8A_BOVIN - Cytochrome c oxidase subunit 8A, mitochondrial OS=Bos taurus GN=COX8A PE=1 SV=1
121.0 [0..1] [69..1]
COX8A_OTOCR - Cytochrome c oxidase subunit 8A, mitochondrial OS=Otolemur crassicaudatus GN=COX8A PE=3 SV=1
121.0 [0..1] [69..1]
COX8A_NYCCO - Cytochrome c oxidase subunit 8A, mitochondrial OS=Nycticebus coucang GN=COX8A PE=3 SV=1
119.0 [0..1] [69..1]
COX8A_TARSY - Cytochrome c oxidase subunit 8A, mitochondrial OS=Tarsius syrichta GN=COX8A PE=3 SV=1
118.0 [0..1] [69..1]
COX8A_EULFU - Cytochrome c oxidase subunit 8A, mitochondrial OS=Eulemur fulvus fulvus GN=COX8A PE=3 SV=1
gi|30409796 - gi|30409796|gb|AAP32256.1| cytochrome c oxidase subunit VIII liver form [Eulemur fulvus]
117.0 [0..1] [69..1]
COX8A_MOUSE - Cytochrome c oxidase subunit 8A, mitochondrial OS=Mus musculus GN=Cox8a PE=3 SV=1
116.0 [0..1] [69..1]
gi|73983764 - gi|73983764|ref|XP_533249.2| PREDICTED: similar to Cytochrome c oxidase polypeptide VIII-liver, mito...
114.0 [0..1] [69..1]
COX8A_RAT - Cytochrome c oxidase subunit 8A, mitochondrial OS=Rattus norvegicus GN=Cox8a PE=1 SV=3
114.0 [0..1] [69..1]
gi|109105621 - gi|109105621|ref|XP_001115516.1| PREDICTED: similar to Cytochrome c oxidase polypeptide VIII-liver/h...
COX8A_MACFA - Cytochrome c oxidase subunit 8A, mitochondrial OS=Macaca fascicularis GN=COX8A PE=3 SV=1
110.0 [0..1] [69..1]

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Predicted Domain #1
Region A:
Residues: [1-69]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVLTSLLLR GLTGSARRLP VPRAKIHSMP PEEELGIMEK AIALTSCFVT FLLPAGWILS  60
   61 HLEDYKRPE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.638 a.239.1 Description not found.
View Download 0.607 a.140.2 SAP domain
View Download 0.507 a.239.1 Description not found.
View Download 0.482 a.2.7 tRNA-binding arm
View Download 0.482 a.2.7 tRNA-binding arm
View Download 0.431 a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.342 a.23.5 Hemolysin expression modulating protein HHA
View Download 0.340 a.74.1 Cyclin-like
View Download 0.317 a.8.5 Description not found.
View Download 0.287 g.39.1 Glucocorticoid receptor-like (DNA-binding domain)
View Download 0.234 d.58.4 Dimeric alpha+beta barrel
View Download 0.209 a.159.4 Description not found.


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