YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: COX8A_TARSY
Organism: Tarsius syrichta
Length: 69 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX8A_TARSY.

Description E-value Query
Range
Subject
Range
COX8A_BOVIN - Cytochrome c oxidase subunit 8A, mitochondrial OS=Bos taurus GN=COX8A PE=1 SV=1
121.0 [0..1] [69..1]
COX8A_OTOCR - Cytochrome c oxidase subunit 8A, mitochondrial OS=Otolemur crassicaudatus GN=COX8A PE=3 SV=1
121.0 [0..1] [69..1]
COX8A_NYCCO - Cytochrome c oxidase subunit 8A, mitochondrial OS=Nycticebus coucang GN=COX8A PE=3 SV=1
119.0 [0..1] [69..1]
COX8A_EULFU - Cytochrome c oxidase subunit 8A, mitochondrial OS=Eulemur fulvus fulvus GN=COX8A PE=3 SV=1
gi|30409796 - gi|30409796|gb|AAP32256.1| cytochrome c oxidase subunit VIII liver form [Eulemur fulvus]
118.0 [0..1] [69..1]
COX8A_MOUSE - Cytochrome c oxidase subunit 8A, mitochondrial OS=Mus musculus GN=Cox8a PE=3 SV=1
115.0 [0..1] [69..1]
gi|73983764 - gi|73983764|ref|XP_533249.2| PREDICTED: similar to Cytochrome c oxidase polypeptide VIII-liver, mito...
114.0 [0..1] [69..1]
COX8A_RAT - Cytochrome c oxidase subunit 8A, mitochondrial OS=Rattus norvegicus GN=Cox8a PE=1 SV=3
114.0 [0..1] [69..1]
COX8A_TRACR - Cytochrome c oxidase subunit 8A, mitochondrial OS=Trachypithecus cristatus GN=COX8A PE=3 SV=1
112.0 [0..1] [69..1]
gi|109105621 - gi|109105621|ref|XP_001115516.1| PREDICTED: similar to Cytochrome c oxidase polypeptide VIII-liver/h...
COX8A_MACFA - Cytochrome c oxidase subunit 8A, mitochondrial OS=Macaca fascicularis GN=COX8A PE=3 SV=1
110.0 [0..1] [69..1]

Back

Predicted Domain #1
Region A:
Residues: [1-69]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVLTPLLLR GLAGSARRLP VPRAQIHSKP PREQLGTMDV AIGITSCFLC FLLPAGWVLS  60
   61 HLESYKKRE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.818 a.239.1 Description not found.
View Download 0.720 d.2.1 Lysozyme-like
View Download 0.677 d.43.1 Elongation factor Ts (EF-Ts), dimerisation domain
View Download 0.677 d.43.1 Elongation factor Ts (EF-Ts), dimerisation domain
View Download 0.620 a.74.1 Cyclin-like
View Download 0.620 a.74.1 Cyclin-like
View Download 0.517 a.239.1 Description not found.
View Download 0.392 a.32.1 Transcription factor IIA (TFIIA), alpha-helical domain
View Download 0.305 a.5.1 DNA helicase RuvA subunit, C-terminal domain
View Download 0.299 a.77.1 DEATH domain
View Download 0.242 a.74.1 Cyclin-like
View Download 0.224 a.5.1 DNA helicase RuvA subunit, C-terminal domain
View Download 0.224 a.126.1 Serum albumin-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle