YRC Public Data Repository - Protein Structure Prediction

Protein:	COX8A_OTOCR
Organism:	Otolemur crassicaudatus
Length:	69 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX8A_OTOCR.

Description	E-value	Query Range	Subject Range
COX8A_BOVIN - Cytochrome c oxidase subunit 8A, mitochondrial OS=Bos taurus GN=COX8A PE=1 SV=1	121.0	[0..1]	[69..1]
COX8A_NYCCO - Cytochrome c oxidase subunit 8A, mitochondrial OS=Nycticebus coucang GN=COX8A PE=3 SV=1	119.0	[0..1]	[69..1]
COX8A_TARSY - Cytochrome c oxidase subunit 8A, mitochondrial OS=Tarsius syrichta GN=COX8A PE=3 SV=1	118.0	[0..1]	[69..1]
COX8A_EULFU - Cytochrome c oxidase subunit 8A, mitochondrial OS=Eulemur fulvus fulvus GN=COX8A PE=3 SV=1 gi\|30409796 - gi\|30409796\|gb\|AAP32256.1\| cytochrome c oxidase subunit VIII liver form [Eulemur fulvus]	117.0	[0..1]	[69..1]
COX8A_MOUSE - Cytochrome c oxidase subunit 8A, mitochondrial OS=Mus musculus GN=Cox8a PE=3 SV=1	116.0	[0..1]	[69..1]
gi\|73983764 - gi\|73983764\|ref\|XP_533249.2\| PREDICTED: similar to Cytochrome c oxidase polypeptide VIII-liver, mito...	114.0	[0..1]	[69..1]
COX8A_RAT - Cytochrome c oxidase subunit 8A, mitochondrial OS=Rattus norvegicus GN=Cox8a PE=1 SV=3	114.0	[0..1]	[69..1]
COX8A_TRACR - Cytochrome c oxidase subunit 8A, mitochondrial OS=Trachypithecus cristatus GN=COX8A PE=3 SV=1	111.0	[0..1]	[69..1]
gi\|109105621 - gi\|109105621\|ref\|XP_001115516.1\| PREDICTED: similar to Cytochrome c oxidase polypeptide VIII-liver/h... COX8A_MACFA - Cytochrome c oxidase subunit 8A, mitochondrial OS=Macaca fascicularis GN=COX8A PE=3 SV=1	110.0	[0..1]	[69..1]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVLTPLLLR GLTGSARRLP VPCARVHSKP PREQLGTMDI AIGLTSCFVC FLLPSGWVLS  60
   61 HLENYKKRE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.505	a.8.9	Description not found.
View	Download	0.491	a.239.1	Description not found.
View	Download	0.403	f.34.1	Mechanosensitive channel protein MscS (YggB), transmembrane region
View	Download	0.393	a.239.1	Description not found.
View	Download	0.393	a.239.1	Description not found.
View	Download	0.341	a.37.1	A DNA-binding domain in eukaryotic transcription factors
View	Download	0.341	a.37.1	A DNA-binding domain in eukaryotic transcription factors
View	Download	0.310	a.64.1	Saposin
View	Download	0.306	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.298	a.48.3	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
View	Download	0.291	a.74.1	Cyclin-like
View	Download	0.291	a.74.1	Cyclin-like
View	Download	0.257	a.163.1	Crustacean CHH/MIH/GIH neurohormone
View	Download	0.245	d.34.1	DNA-binding domain of Mlu1-box binding protein MBP1

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits