YRC Public Data Repository - Protein Structure Prediction

Protein:	COX8A_EULFU
Organism:	Eulemur fulvus fulvus
Length:	69 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX8A_EULFU.

Description	E-value	Query Range	Subject Range
COX8A_BOVIN - Cytochrome c oxidase subunit 8A, mitochondrial OS=Bos taurus GN=COX8A PE=1 SV=1	120.0	[0..1]	[69..1]
COX8A_OTOCR - Cytochrome c oxidase subunit 8A, mitochondrial OS=Otolemur crassicaudatus GN=COX8A PE=3 SV=1	120.0	[0..1]	[69..1]
COX8A_TARSY - Cytochrome c oxidase subunit 8A, mitochondrial OS=Tarsius syrichta GN=COX8A PE=3 SV=1	118.0	[0..1]	[69..1]
COX8A_NYCCO - Cytochrome c oxidase subunit 8A, mitochondrial OS=Nycticebus coucang GN=COX8A PE=3 SV=1	118.0	[0..1]	[69..1]
COX8A_MOUSE - Cytochrome c oxidase subunit 8A, mitochondrial OS=Mus musculus GN=Cox8a PE=3 SV=1	114.0	[0..1]	[69..1]
gi\|73983764 - gi\|73983764\|ref\|XP_533249.2\| PREDICTED: similar to Cytochrome c oxidase polypeptide VIII-liver, mito...	113.0	[0..1]	[69..1]
COX8A_RAT - Cytochrome c oxidase subunit 8A, mitochondrial OS=Rattus norvegicus GN=Cox8a PE=1 SV=3	112.0	[0..1]	[69..1]
COX8A_TRACR - Cytochrome c oxidase subunit 8A, mitochondrial OS=Trachypithecus cristatus GN=COX8A PE=3 SV=1	110.0	[0..1]	[69..1]
gi\|109105621 - gi\|109105621\|ref\|XP_001115516.1\| PREDICTED: similar to Cytochrome c oxidase polypeptide VIII-liver/h... COX8A_MACFA - Cytochrome c oxidase subunit 8A, mitochondrial OS=Macaca fascicularis GN=COX8A PE=3 SV=1	109.0	[0..1]	[69..1]

Back

Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVLTPLLLR GLTGSARRLP VLRAQVHSKP PREKLGTMDV AIGLTSCFVC FLLPSGWVLS  60
   61 HLETYKKRE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.808	a.77.1	DEATH domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits