YRC Public Data Repository - Protein Structure Prediction

Protein:	CUTA_ECOLI
Organism:	Escherichia coli
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CUTA_ECOLI.

Description	E-value	Query Range	Subject Range
CUTA_XENLA - Protein CutA homolog OS=Xenopus laevis GN=cuta PE=2 SV=2	165.0	[0..1]	[109..39]
gi\|108870878, gi... - gi\|157133306\|ref\|XP_001662826.1\| hypothetical protein AaeL_AAEL012710 [Aedes aegypti], gi\|108870878\|...	164.0	[0..1]	[111..62]
gi\|114606922 - gi\|114606922\|ref\|XP_001171110.1\| PREDICTED: cutA divalent cation tolerance homolog isoform 7 [Pan tr...	160.0	[0..4]	[111..61]
gi\|56554578, gi\|... - gi\|56554583\|pdb\|1XK8\|F Chain F, Divalent Cation Tolerant Protein Cuta From Homo Sapiens O60888, gi\|5...	160.0	[0..4]	[111..29]
gi\|109070772 - gi\|109070772\|ref\|XP_001116293.1\| PREDICTED: cutA divalent cation tolerance homolog (E. coli) isoform...	159.0	[0..4]	[111..61]
CUTA1_ORYSJ - Protein CutA 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CUTA1 PE=1 SV=1 gi\|218184420 - gi\|218184420\|gb\|EEC66847.1\| hypothetical protein OsI_33322 [Oryza sativa Indica Group]	159.0	[0..2]	[112..65]
gi\|51971807 - gi\|51971807\|dbj\|BAD44568.1\| truncated copper-binding protein CUTA (CUTA) [Arabidopsis thaliana]	159.0	[0..2]	[112..65]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDEKSSNTA SVVVLCTAPD EATAQDLAAK VLAEKLAACA TLIPGATSLY YWEGKLEQEY  60
   61 EVQMILKTTV SHQQALLECL KSHHPYQTPE LLVLPVTHGD TDYLSWLNAS LR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	1naqA
Description:	Crystal structure of CUTA1 from E.coli at 1.7 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.156220452881684	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: