YRC Public Data Repository - Protein Structure Prediction

Protein:	CUSF_ECOLI
Organism:	Escherichia coli
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CUSF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77359271, gi\|... - gi\|77359271\|ref\|YP_338846.1\| cation efflux system protein [Pseudoalteromonas haloplanktis TAC125], g...	130.0	[0..7]	[110..380]
gi\|27358826, gi\|... - gi\|27367257\|ref\|NP_762784.1\| hypothetical protein VV2_0851 [Vibrio vulnificus CMCP6], gi\|27358826\|gb...	126.0	[0..1]	[107..376]
gi\|91226392, gi\|... - gi\|91226392\|ref\|ZP_01261191.1\| putative cation efflux system transmembrane protein [Vibrio alginolyt...	125.0	[0..1]	[107..378]
gi\|114772337 - gi\|114772337\|ref\|ZP_01449712.1\| putative cation efflux system protein [alpha proteobacterium HTCC225... gi\|221134444 - gi\|221134444\|ref\|ZP_03560749.1\| membrane-fusion protein-like [Glaciecola sp. HTCC2999] gi\|114547067, gi... - gi\|114772337\|ref\|ZP_01449712.1\| putative cation efflux system protein [alpha proteobacterium HTCC225...	124.0	[0..6]	[108..381]
gi\|37676977, gi\|... - gi\|37676977\|ref\|NP_937373.1\| putative cation efflux system transmembrane protein [Vibrio vulnificus ...	124.0	[0..1]	[107..376]
gi\|89951175, gi\|... - gi\|90021575\|ref\|YP_527402.1\| membrane-fusion protein-like [Saccharophagus degradans 2-40], gi\|899511...	123.0	[0..4]	[108..381]
gi\|28808647, gi\|... - gi\|28900336\|ref\|NP_799991.1\| putative cation efflux system transmembrane protein [Vibrio parahaemoly... gi\|28808647 - gi\|28808647\|dbj\|BAC61824.1\| putative cation efflux system transmembrane protein [Vibrio parahaemolyt...	118.0	[0..7]	[107..386]
gi\|85711084, gi\|... - gi\|85711084\|ref\|ZP_01042144.1\| Membrane-fusion protein, RND-like efflux system component [Idiomarina...	117.0	[0..3]	[108..375]
gi\|120607123, gi... - gi\|121595043\|ref\|YP_986939.1\| hypothetical protein Ajs_2720 [Acidovorax sp. JS42], gi\|120607123\|gb\|A...	116.0	[0..2]	[110..5]
gi\|88774428, gi\|... - gi\|88794143\|ref\|ZP_01109853.1\| putative cation efflux system protein [Alteromonas macleodii 'Deep ec...	116.0	[0..4]	[108..377]

Back

Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKALQVAMF SLFTVIGFNA QANEHHHETM SEAQPQVISA TGVVKGIDLE SKKITIHHDP  60
   61 IAAVNWPEMT MRFTITPQTK MSEIKTGDKV AFNFVQQGNL SLLQDIKVSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.30103
Match:	1zeqX
Description:	1.5 A Structure of apo-CusF residues 6-88 from Escherichia coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits