YRC Public Data Repository - Protein Structure Prediction

Protein:	CUD2_SCHGR
Organism:	Schistocerca gregaria
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CUD2_SCHGR.

Description	E-value	Query Range	Subject Range
gi\|91083823 - gi\|91083823\|ref\|XP_973633.1\| PREDICTED: similar to Cuticular protein 65Az CG12330-PA [Tribolium cast...	137.0	[0..4]	[126..255]
gi\|119114027, gi... - gi\|119114027\|ref\|XP_318997.3\| ENSANGP00000014755 [Anopheles gambiae str. PEST], gi\|116118219\|gb\|EAA1...	126.0	[0..16]	[113..121]
gi\|45445693, gi\|... - gi\|45552587\|ref\|NP_995817.1\| cuticular protein 47Ef, isoform B [Drosophila melanogaster], gi\|4544569...	123.0	[0..7]	[113..119]
gi\|125808726, gi... - gi\|54636022\|gb\|EAL25425.1\| GA15602-PA [Drosophila pseudoobscura], gi\|125808726\|ref\|XP_001360850.1\| G...	122.0	[0..8]	[126..71]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QFGNYYQPQP TYSPPARQQV PILQYSNEVN PDGSYAYSYQ TGNGIAAQEQ GYLKNPGQRD  60
   61 LEAENVQGTF SYTAPDGTPI SLRYVADENG FRAEGAHLPT PPPIPEAIAR SLEVIARTPQ 120
  121 QPFQPQPQYN PFRRF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	28.552842
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits