YRC Public Data Repository - Protein Structure Prediction

Protein:	CU17_BOMMO
Organism:	Bombyx mori
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CU17_BOMMO.

Description	E-value	Query Range	Subject Range
gi\|108881215, gi... - gi\|157135292\|ref\|XP_001656586.1\| pupal cuticle protein 78E, putative [Aedes aegypti], gi\|108881215\|g...	145.0	[0..1]	[133..1]
gi\|125808726, gi... - gi\|54636022\|gb\|EAL25425.1\| GA15602-PA [Drosophila pseudoobscura], gi\|125808726\|ref\|XP_001360850.1\| G...	142.0	[0..3]	[134..60]
gi\|91079648 - gi\|91079648\|ref\|XP_968350.1\| PREDICTED: similar to Cuticular protein 47Ef CG13214-PA [Tribolium cast...	139.0	[0..28]	[125..78]
gi\|119114027, gi... - gi\|119114027\|ref\|XP_318997.3\| ENSANGP00000014755 [Anopheles gambiae str. PEST], gi\|116118219\|gb\|EAA1...	136.0	[0..25]	[121..121]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLIVLAVA VACASADVSH IAKSDEYAAP VVKSSYDITP EGHFQFNYET GNGIYAQAEG  60
   61 AVKNVNSEYP AIEVKGAYKY TSPDGQPIDL AYVADENGYQ PQGSHLPTPH PIPEAIARAL 120
  121 AYIEAHPPSP SVVERKVVAN LLG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	30.823909
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits