YRC Public Data Repository - Protein Structure Prediction

Protein:	C20orf108
Organism:	Homo sapiens
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C20orf108.

Description	E-value	Query Range	Subject Range
gi\|55653050 - gi\|55653050\|ref\|XP_525363.1\| PREDICTED: similar to C20orf108 [Pan troglodytes]	2.0E-65	[1..192]	[1..192]
gi\|15485624, gi\|... - gi\|18201878\|ref\|NP_543011.1\| hypothetical protein LOC116151 [Homo sapiens], gi\|15485624\|emb\|CAC67490...	8.0E-64	[1..192]	[1..192]
gi\|74203925, gi\|... - gi\|74203925\|dbj\|BAE28553.1\| unnamed protein product [Mus musculus], gi\|74201761\|dbj\|BAE28489.1\| unna...	2.0E-63	[1..192]	[1..190]
gi\|109091545 - gi\|109091545\|ref\|XP_001090987.1\| PREDICTED: hypothetical protein [Macaca mulatta]	3.0E-62	[1..192]	[1..192]
gi\|149030059, gi... - gi\|27705090\|ref\|XP_230889.1\| PREDICTED: hypothetical protein [Rattus norvegicus], gi\|187469709\|gb\|AA...	1.0E-60	[1..192]	[1..190]
gi\|76633122, gi\|... - gi\|76633122\|ref\|XP_594700.2\| PREDICTED: similar to CG15403-PA [Bos taurus], gi\|122692571\|ref\|NP_0010...	1.0E-59	[1..192]	[1..192]
gi\|73992611 - gi\|73992611\|ref\|XP_543063.2\| PREDICTED: similar to CG15403-PA [Canis familiaris]	1.0E-55	[1..192]	[1..192]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLLALLGP AGRVGARVRP RATWLLGATA PCAPPPLALA LLPPRLDARL LRTARGDCRG  60
   61 HQDPSQATGT TGSSVSCT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [79-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEKKQSKSQQ LKKIFQEYGT VGVSLHIGIS LISLGIFYMV VSSGVDMPAI LLKLGFKESL  60
   61 VQSKMAAGTS TFVVAYAIHK LFAPVRISIT LVSVPLIVRY FRKVGFFKPP AAKP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	68.236572
Match:	PF06916.4
Description:	No description for PF06916.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits