YRC Public Data Repository - Protein Structure Prediction

Protein:	CSK_CALVO
Organism:	Calliphora vomitoria
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSK_CALVO.

Description	E-value	Query Range	Subject Range
gi\|54639384, gi\|... - gi\|54639384\|gb\|EAL28786.1\| GA14787-PA [Drosophila pseudoobscura], gi\|125777524\|ref\|XP_001359636.1\| G... DSK_DROPS - Drosulfakinins OS=Drosophila pseudoobscura pseudoobscura GN=Dsk PE=3 SV=1	98.0	[0..89]	[138..77]
Dsk-PA - The gene Drosulfakinin is referred to in FlyBase by the symbol Dmel\Dsk (CG18090, FBgn0000500). It i... gi\|220949332 - gi\|220949332\|gb\|ACL87209.1\| Dsk-PA [synthetic construct]	97.0	[0..89]	[138..94]
gi\|58803215 - gi\|58803215\|gb\|AAW82713.1\| sulfakinin [Anopheles maculatus]	70.0	[0..109]	[138..155]
AGAP009275-PA - Sk: sulfakinin neuropeptide\|protein_coding\|3R:30524512:30525096:1\|gene:AGAP009275 gi\|118791987, gi... - gi\|118791987\|ref\|XP_001238248.1\| sulfakinin (AGAP009275-PA) [Anopheles gambiae str. PEST], gi\|116117...	68.0	[0..109]	[138..164]
gi\|37790786 - gi\|37790786\|gb\|AAR03495.1\| sulfakinin preproprotein [Anopheles gambiae]	68.0	[0..109]	[138..163]
gi\|91083939 - gi\|91083939\|ref\|XP_974906.1\| PREDICTED: similar to CG18090-PA [Tribolium castaneum]	57.0	[0..97]	[139..36]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSQQRIFNS KYFIFFIAVL SIFWLPTMSA RNLENSKNEN GISGSNSGNG KMNSQYNTGS  60
   61 PSAYYSAKHN LRSMLMAPKD YQQKLHAKIP LNLDLMDFLL EYEDEDRSKR FDDYGHMRFG 120
  121 KRGGEEQFDD YGHMRFGRSI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits