YRC Public Data Repository - Protein Structure Prediction

Protein:	CRED_ECOLI
Organism:	Escherichia coli
Length:	450 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRED_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|189379498, gi... - gi\|189379498\|gb\|EDU97914.1\| inner membrane protein CreD [Escherichia coli O157:H7 str. EC508], gi\|16... gi\|195937671 - gi\|195937671\|ref\|ZP_03083053.1\| hypothetical protein EscherichcoliO157_14687 [Escherichia coli O157:... gi\|208728322, gi... - gi\|208808521\|ref\|ZP_03250858.1\| inner membrane protein CreD [Escherichia coli O157:H7 str. EC4206], ... gi\|208733233, gi... - gi\|208811956\|ref\|ZP_03253285.1\| inner membrane protein CreD [Escherichia coli O157:H7 str. EC4045], ... gi\|168766684, gi... - gi\|189364311\|gb\|EDU82730.1\| inner membrane protein CreD [Escherichia coli O157:H7 str. EC4486], gi\|1... gi\|168776620, gi... - gi\|187768009\|gb\|EDU31853.1\| inner membrane protein CreD [Escherichia coli O157:H7 str. EC4196], gi\|1... gi\|189000744, gi... - gi\|189000744\|gb\|EDU69730.1\| inner membrane protein CreD [Escherichia coli O157:H7 str. EC4076], gi\|1... gi\|168785045, gi... - gi\|189375087\|gb\|EDU93503.1\| inner membrane protein CreD [Escherichia coli O157:H7 str. EC869], gi\|16... gi\|15834612, gi\|... - gi\|15834612\|ref\|NP_313385.1\| CreD [Escherichia coli O157:H7], gi\|13364836\|dbj\|BAB38781.1\| tolerance ... gi\|209748760, gi... - pir\|\|H86139 tolerance to colicin E2 [imported] - Escherichia coli (strain O157:H7, substrain EDL933... gi\|168750961, gi... - gi\|188014902\|gb\|EDU53024.1\| inner membrane protein CreD [Escherichia coli O157:H7 str. EC4113], gi\|1... gi\|189356088, gi... - gi\|189356088\|gb\|EDU74507.1\| inner membrane protein CreD [Escherichia coli O157:H7 str. EC4401], gi\|1... gi\|12519432, gi\|... - gi\|15804971\|ref\|NP_291013.1\| hypothetical protein Z6003 [Escherichia coli O157:H7 EDL933], gi\|125194... gi\|168762754, gi... - gi\|189366941\|gb\|EDU85357.1\| inner membrane protein CreD [Escherichia coli O157:H7 str. EC4501], gi\|1... gi\|254796396, gi... - gi\|254796396\|ref\|YP_003081233.1\| inner membrane protein CreD [Escherichia coli O157:H7 str. TW14359]... gi\|208741699, gi... - gi\|208821576\|ref\|ZP_03261896.1\| inner membrane protein CreD [Escherichia coli O157:H7 str. EC4042], ... gi\|15834612, gi\|... - gi\|15834612\|ref\|NP_313385.1\| hypothetical protein ECs5358 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|209396151, gi... - gi\|209396151\|ref\|YP_002273921.1\| inner membrane protein CreD [Escherichia coli O157:H7 str. EC4115],... gi\|217326555, gi... - gi\|217326555\|ref\|ZP_03442639.1\| inner membrane protein CreD [Escherichia coli O157:H7 str. TW14588],...	587.0	[0..1]	[450..1]
gi\|24115628, gi\|... - gi\|24115628\|ref\|NP_710138.1\| hypothetical protein SF4432 [Shigella flexneri 2a str. 301], gi\|2405496... gi\|30065636, gi\|... - gi\|30065636\|ref\|NP_839807.1\| hypothetical protein S4703 [Shigella flexneri 2a str. 2457T], gi\|300439... gi\|110808188, gi... - gi\|110808188\|ref\|YP_691708.1\| hypothetical protein SFV_4434 [Shigella flexneri 5 str. 8401], gi\|1106...	586.0	[0..1]	[450..1]
gi\|73858311, gi\|... - gi\|74314834\|ref\|YP_313253.1\| hypothetical protein SSON_4550 [Shigella sonnei Ss046], gi\|73858311\|gb\|...	586.0	[0..1]	[450..1]
gi\|110346431, gi... - gi\|110644839\|ref\|YP_672569.1\| hypothetical protein ECP_4786 [Escherichia coli 536], gi\|110346431\|gb\|... gi\|227885108, gi... - gi\|227885108\|ref\|ZP_04002913.1\| inner membrane protein CreD [Escherichia coli 83972], gi\|227837937\|g... gi\|26111726, gi\|... - gi\|26251293\|ref\|NP_757333.1\| hypothetical protein c5487 [Escherichia coli CFT073], gi\|26111726\|gb\|AA... gi\|190906552, gi... - gi\|75239536\|ref\|ZP_00723506.1\| COG4452: Inner membrane protein involved in colicin E2 resistance [Es...	582.0	[0..1]	[450..1]
gi\|75175999, gi\|... - gi\|75175999\|ref\|ZP_00696178.1\| COG4452: Inner membrane protein involved in colicin E2 resistance [Sh...	581.0	[0..1]	[450..1]
gi\|115515884, gi... - gi\|117626760\|ref\|YP_860083.1\| hypothetical protein APECO1_1979 [Escherichia coli APEC O1], gi\|115515... gi\|218368402, gi... - gi\|218561633\|ref\|YP_002394546.1\| hypothetical protein ECS88_5083 [Escherichia coli S88], gi\|21836840... gi\|237704136, gi... - gi\|237704136\|ref\|ZP_04534617.1\| inner membrane protein CreD [Escherichia sp. 3_2_53FAA], gi\|22690204... gi\|91075692, gi\|... - gi\|91214118\|ref\|YP_544104.1\| hypothetical protein UTI89_C5173 [Escherichia coli UTI89], gi\|91075692\|...	581.0	[0..1]	[450..1]
gi\|82546751, gi\|... - gi\|82546751\|ref\|YP_410698.1\| hypothetical protein SBO_4463 [Shigella boydii Sb227], gi\|81248162\|gb\|A...	578.0	[0..1]	[450..1]
gi\|75515591 - gi\|75515591\|ref\|ZP_00737748.1\| COG4452: Inner membrane protein involved in colicin E2 resistance [Es...	575.0	[0..10]	[450..1]
gi\|75229459 - gi\|75229459\|ref\|ZP_00716009.1\| COG4452: Inner membrane protein involved in colicin E2 resistance [Es...	573.0	[0..28]	[450..19]
gi\|75198214 - gi\|75198214\|ref\|ZP_00708284.1\| COG4452: Inner membrane protein involved in colicin E2 resistance [Es...	571.0	[0..10]	[450..1]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSPLFWKM TSLFGAVLLL LIPIMLIRQV IVERADYRSD VEDAIRQSTS GPQKLVGPLI  60
   61 AIPVTELYTV QEEDKTVERK RSFIHFW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [88-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPESLMVDGN QNVEERKIGI YTGQVWHSDL TLKADFDVSR LSELNAPNIT LGKPFIVISV  60
   61 GDARGIGVVK APEVNGTALT IEPGTGLEQG GQGVHIPLPE GDWRKQNLKL NMALNLSGTG 120
  121 DLSVVPGGRN SEMTLTSNWP HPSFLGDFLP AKREVSESGF QAHWQSSWFA NNLGERFASG 180
  181 NDTG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [272-450]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WENFPAFSVA VTTPADQYQL TDRATKYAIL LIALTFMAFF VFETLTAQRL HPMQYLLVGL  60
   61 SLVMFYLLLL ALSEHTGFTV AWIIASLIGA IMNGIYLQAV LKGWCNSMLF TLALLLLDGV 120
  121 MWGLLNSADS ALLLGTSVLV VALAGMMFVT RNIDWYAFSL PKMKASKEVT TDDELRIWK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits