YRC Public Data Repository - Protein Structure Prediction

Protein:	CRCA_ECOLI
Organism:	Escherichia coli
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRCA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|24112077, gi\|... - gi\|24112077\|ref\|NP_706587.1\| palmitoyl transferase for Lipid A [Shigella flexneri 2a str. 301], gi\|2... gi\|30040433, gi\|... - gi\|30062188\|ref\|NP_836359.1\| palmitoyl transferase for Lipid A [Shigella flexneri 2a str. 2457T], gi... PAGP_SHIF2 - Lipid A palmitoyltransferase PagP OS=Shigella flexneri serotype X (strain 2002017) GN=pagP PE=3 SV=2 PAGP_SHIFL - Lipid A palmitoyltransferase PagP OS=Shigella flexneri GN=pagP PE=3 SV=1 PAGP_SHIF8 - Lipid A palmitoyltransferase PagP OS=Shigella flexneri serotype 5b (strain 8401) GN=pagP PE=3 SV=2	316.0	[0..1]	[186..1]
gi\|194432567, gi... - gi\|83570454\|ref\|ZP_00921899.1\| hypothetical protein Sdys1_01001421 [Shigella dysenteriae 1012], gi\|1...	316.0	[0..1]	[186..1]
gi\|110804728, gi... - gi\|110804728\|ref\|YP_688248.1\| palmitoyl transferase for Lipid A [Shigella flexneri 5 str. 8401], gi\|...	316.0	[0..1]	[186..9]
gi\|209400211, gi... - gi\|209400211\|ref\|YP_002269258.1\| antimicrobial peptide resistance and lipid A acylation protein PagP... gi\|15800337, gi\|... - gi\|15800337\|ref\|NP_286349.1\| palmitoyl transferase for Lipid A [Escherichia coli O157:H7 EDL933], gi... gi\|208737469, gi... - gi\|208823276\|ref\|ZP_03263594.1\| antimicrobial peptide resistance and lipid A acylation protein PagP ... gi\|208815106, gi... - gi\|208815106\|ref\|ZP_03256285.1\| antimicrobial peptide resistance and lipid A acylation protein PagP ... gi\|208727285, gi... - gi\|208807484\|ref\|ZP_03249821.1\| antimicrobial peptide resistance and lipid A acylation protein PagP ... gi\|217325037, gi... - gi\|217325037\|ref\|ZP_03441121.1\| antimicrobial peptide resistance and lipid A acylation protein PagP ... gi\|168774687, gi... - gi\|187769784\|gb\|EDU33628.1\| antimicrobial peptide resistance and lipid A acylation protein PagP [Esc... gi\|168770226, gi... - gi\|189360857\|gb\|EDU79276.1\| antimicrobial peptide resistance and lipid A acylation protein PagP [Esc... gi\|168760227, gi... - gi\|189369127\|gb\|EDU87543.1\| antimicrobial peptide resistance and lipid A acylation protein PagP [Esc... gi\|168754725, gi... - gi\|189358110\|gb\|EDU76529.1\| antimicrobial peptide resistance and lipid A acylation protein PagP [Esc... gi\|195936172 - gi\|195936172\|ref\|ZP_03081554.1\| palmitoyl transferase for Lipid A [Escherichia coli O157:H7 str. EC4... gi\|189379383, gi... - gi\|189379383\|gb\|EDU97799.1\| antimicrobial peptide resistance and lipid A acylation protein PagP [Esc... gi\|189373743, gi... - gi\|189373743\|gb\|EDU92159.1\| antimicrobial peptide resistance and lipid A acylation protein PagP [Esc... gi\|189002978, gi... - gi\|189002978\|gb\|EDU71964.1\| antimicrobial peptide resistance and lipid A acylation protein PagP [Esc... gi\|254591189, gi... - gi\|254791789\|ref\|YP_003076626.1\| palmitoyl transferase for Lipid A [Escherichia coli O157:H7 str. TW... gi\|188013581, gi... - gi\|188013581\|gb\|EDU51703.1\| antimicrobial peptide resistance and lipid A acylation protein PagP [Esc... gi\|15829915, gi\|... - gi\|15829915\|ref\|NP_308688.1\| palmitoyl transferase [Escherichia coli O157:H7 str. Sakai], gi\|1336011... PAGP_ECO57 - Lipid A palmitoyltransferase PagP OS=Escherichia coli O157:H7 GN=pagP PE=1 SV=1 gi\|209777236, gi... - pir\|\|A85562 hypothetical protein crcA [imported] - Escherichia coli (strain O157:H7, substrain EDL9...	315.0	[0..1]	[186..1]
PAGP_ECOL6 - Lipid A palmitoyltransferase PagP OS=Escherichia coli O6 GN=pagP PE=3 SV=1 PAGP_ECOL6 - Lipid A palmitoyltransferase PagP OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=... gi\|227838484, gi... - gi\|227884398\|ref\|ZP_04002203.1\| palmitoyl transferase for Lipid A [Escherichia coli 83972], gi\|22783... gi\|218368981, gi... - gi\|218698995\|ref\|YP_002406624.1\| palmitoyl transferase [Escherichia coli IAI39], gi\|218368981\|emb\|CA...	315.0	[0..1]	[186..1]
gi\|226898615, gi... - gi\|237707405\|ref\|ZP_04537886.1\| palmitoyl transferase for Lipid A [Escherichia sp. 3_2_53FAA], gi\|22... gi\|218364331, gi... - gi\|218557562\|ref\|YP_002390475.1\| palmitoyl transferase [Escherichia coli S88], gi\|218364331\|emb\|CAR0... gi\|117622841, gi... - gi\|117622841\|ref\|YP_851754.1\| palmitoyl transferase for Lipid A [Escherichia coli APEC O1], gi\|11551... PAGP_ECOUT - Lipid A palmitoyltransferase PagP OS=Escherichia coli (strain UTI89 / UPEC) GN=pagP PE=3 SV=1	314.0	[0..1]	[186..1]
PAGP_SHIBS - Lipid A palmitoyltransferase PagP OS=Shigella boydii serotype 4 (strain Sb227) GN=pagP PE=3 SV=1	314.0	[0..1]	[186..1]
gi\|190907388, gi... - gi\|191172289\|ref\|ZP_03033831.1\| antimicrobial peptide resistance and lipid A acylation protein PagP ... PAGP_ECOL5 - Lipid A palmitoyltransferase PagP OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=pagP PE=3 SV...	314.0	[0..1]	[186..1]
gi\|207856094, gi... - gi\|207856094\|ref\|YP_002242745.1\| palmitoyl transferase [Salmonella enterica subsp. enterica serovar ... PAGP_SALPA - Lipid A palmitoyltransferase PagP OS=Salmonella paratyphi A GN=pagP PE=3 SV=1 gi\|205351916, gi... - gi\|205351916\|ref\|YP_002225717.1\| palmitoyl transferase [Salmonella enterica subsp. enterica serovar ... gi\|197363160, gi... - gi\|197363160\|ref\|YP_002142797.1\| palmitoyl transferase [Salmonella enterica subsp. enterica serovar ... gi\|148508403 - gi\|148508403\|gb\|ABQ76176.1\| PagP [Salmonella enteritidis] gi\|197262128, gi... - gi\|197262128\|ref\|ZP_03162202.1\| antimicrobial peptide resistance and lipid A acylation protein PagP ... PAGP_SALPA - Lipid A palmitoyltransferase PagP OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=pagP PE=3...	305.0	[0..1]	[186..5]
gi\|3789781\|gb\|AA... - PagP [Salmonella typhimurium] gi\|205330885, gi... - gi\|205330885\|gb\|EDZ17649.1\| antimicrobial peptide resistance and lipid A acylation protein PagP [Sal... gi\|3789781 - gi\|3789781\|gb\|AAC67499.1\| PagP [Salmonella typhimurium]	303.0	[0..1]	[186..1]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVSKYVAIF SFVFIQLISV GKVFANADEW MTTFRENIAQ TWQQPEHYDL YIPAITWHAR  60
   61 FAYDKEKTDR YNERPWGGGF GLSRWDEKGN WHGLYAMAFK DSWNKWEPIA GYGWESTWRP 120
  121 LADENFHLGL GFTAGVTARD NWNYIPLPVL LPLASVGYGP VTFQMTYIPG TYNNGNVYFA 180
  181 WMRFQF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.045757
Match:	1mm4A
Description:	Outer membrane enzyme PagP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits