YRC Public Data Repository - Protein Structure Prediction

Protein:	CPDP_YERPE
Organism:	Yersinia pestis
Length:	343 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CPDP_YERPE.

Description	E-value	Query Range	Subject Range
Q667S9\|Q667S9_YERPS - Putative 3',5'-cyclic-nucleotide phosphodiesterase precursor - Yersinia pseudotuberculosis gi\|21958034, gi\|... - gi\|22125171\|ref\|NP_668594.1\| hypothetical protein y1271 [Yersinia pestis KIM], gi\|21958034\|gb\|AAM848... gi\|167469000 - gi\|167469000\|ref\|ZP_02333704.1\| 3',5'-cyclic-nucleotide phosphodiesterase [Yersinia pestis FV-1] gi\|229681524, gi... - gi\|229901595\|ref\|ZP_04516717.1\| putative 3',5'-cyclic-nucleotide phosphodiesterase [Yersinia pestis ... gi\|169749944, gi... - gi\|170023410\|ref\|YP_001719915.1\| cyclic-AMP phosphodiesterase [Yersinia pseudotuberculosis YPIII], g... gi\|108808421, gi... - gi\|108808421\|ref\|YP_652337.1\| putative 3',5'-cyclic-nucleotide phosphodiesterase [Yersinia pestis An... gi\|186896328, gi... - gi\|186896328\|ref\|YP_001873440.1\| cyclic-AMP phosphodiesterase [Yersinia pseudotuberculosis PB1/+], g... gi\|89104179, gi\|... - gi\|89104179\|ref\|ZP_01176730.1\| COG5212: Low-affinity cAMP phosphodiesterase [Yersinia pestis biovar ... gi\|229688369, gi... - gi\|229898821\|ref\|ZP_04513966.1\| putative 3',5'-cyclic-nucleotide phosphodiesterase [Yersinia pestis ... gi\|229701355, gi... - gi\|229895549\|ref\|ZP_04510720.1\| putative 3',5'-cyclic-nucleotide phosphodiesterase [Yersinia pestis ... gi\|229694623, gi... - gi\|229838257\|ref\|ZP_04458416.1\| putative 3',5'-cyclic-nucleotide phosphodiesterase [Yersinia pestis ... gi\|165925188, gi... - gi\|165925188\|ref\|ZP_02221020.1\| 3',5'-cyclic-nucleotide phosphodiesterase [Yersinia pestis biovar Or... gi\|166008399, gi... - gi\|166008399\|ref\|ZP_02229297.1\| 3',5'-cyclic-nucleotide phosphodiesterase [Yersinia pestis biovar An... gi\|166212613, gi... - gi\|166212613\|ref\|ZP_02238648.1\| 3',5'-cyclic-nucleotide phosphodiesterase [Yersinia pestis biovar An... gi\|167399328, gi... - gi\|167399328\|ref\|ZP_02304852.1\| 3',5'-cyclic-nucleotide phosphodiesterase [Yersinia pestis biovar An... gi\|51597228, gi\|... - gi\|51597228\|ref\|YP_071419.1\| putative 3',5'-cyclic-nucleotide phosphodiesterase [Yersinia pseudotube... gi\|167421148, gi... - gi\|167421148\|ref\|ZP_02312901.1\| 3',5'-cyclic-nucleotide phosphodiesterase [Yersinia pestis biovar Or... gi\|45437147, gi\|... - gi\|45442283\|ref\|NP_993822.1\| hypothetical protein YP_2500 [Yersinia pestis biovar Microtus str. 9100... gi\|167423309, gi... - gi\|167423309\|ref\|ZP_02315062.1\| 3',5'-cyclic-nucleotide phosphodiesterase [Yersinia pestis biovar Me... gi\|145598859, gi... - gi\|145598859\|ref\|YP_001162935.1\| 3',5'-cyclic-nucleotide phosphodiesterase [Yersinia pestis Pestoide...	8.0E-56	[1..343]	[3..345]
gi\|152962077, gi... - gi\|77629947\|ref\|ZP_00792533.1\| COG5212: Low-affinity cAMP phosphodiesterase [Yersinia pseudotubercul...	1.0E-55	[1..343]	[3..345]
gi\|162418847, gi... - gi\|77634996\|ref\|ZP_00797086.1\| COG5212: Low-affinity cAMP phosphodiesterase [Yersinia pestis Angola]...	2.0E-54	[1..343]	[3..345]
gi\|77978029 - gi\|77978029\|ref\|ZP_00833464.1\| COG5212: Low-affinity cAMP phosphodiesterase [Yersinia intermedia ATC...	1.0E-51	[17..342]	[2..327]
gi\|77961527, gi\|... - gi\|77961527\|ref\|ZP_00825362.1\| COG5212: Low-affinity cAMP phosphodiesterase [Yersinia mollaretii ATC...	2.0E-50	[18..342]	[12..336]
gi\|238721417, gi... - gi\|77972463\|ref\|ZP_00828028.1\| COG5212: Low-affinity cAMP phosphodiesterase [Yersinia frederiksenii ...	5.0E-47	[20..342]	[29..351]
gi\|77956266 - gi\|77956266\|ref\|ZP_00820383.1\| COG5212: Low-affinity cAMP phosphodiesterase [Yersinia bercovieri ATC...	6.0E-47	[36..342]	[21..327]
gi\|3413828, gi\|2... - gi\|3413828\|emb\|CAA20296.1\| conserved hypothetical protein SC9A10.09 [Streptomyces coelicolor A3(2)],... gi\|7479794 - pir\|\|T35845 hypothetical protein SC9A10.09 SC9A10.09 - Streptomyces coelicolor	1.0E-43	[32..342]	[14..284]
gi\|25304226 - pir\|\|E97887 conserved hypothetical protein spr0125 [imported] - Streptococcus pneumoniae (strain R6) gi\|15457664, gi\|... - gi\|15902169\|ref\|NP_357719.1\| hypothetical protein spr0125 [Streptococcus pneumoniae R6], gi\|15457664...	3.0E-43	[18..334]	[42..314]
gi\|59711863, gi\|... - gi\|59711863\|ref\|YP_204639.1\| 3',5'-cyclic-nucleotide phosphodiesterase [Vibrio fischeri ES114], gi\|5...	4.0E-43	[27..342]	[14..330]

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Predicted Domain #1

Region A:
Residues: [1-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYLSIKSAS DKIKSGLLKT GVILSFSLFS SLSTAAFEVV ALGVDGGVSD GNLTSYLIRN  60
   61 DSQPLYLGLD AGSVLPGIAR ALEKGHFAAI TDAMAAPLTR QGYIFRQSIN SYFISHAHLD 120
  121 HVSGLIIGSP DDSKKTIYAS ADTIDVLRNY YFNWRVWPNF TDSGSGARLG TYRMQVVRPA 180
  181 QSLSLGLTRL TGEMYPLSHD KSPSSMLLIS SNNEFFAYFG DTGPDDVEKS KNLDTVWRKL 240
  241 AEKVTQQQLK GMIIEVSYPN DVADNKLFGH MTPTWLLKEL KKLEQYSGEG QPLKGLPVVI 300
  301 SHIKPSFQQG QDVRKLILSE LQQGNDMGIE FILMEQGDSQ KFQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	2i7tA
Description:	No description for 2i7tA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits