YRC Public Data Repository - Protein Structure Prediction

Protein:	CX7A1_PIG
Organism:	Sus scrofa
Length:	80 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CX7A1_PIG.

Description	E-value	Query Range	Subject Range
CX7A1_BOVIN - Cytochrome c oxidase subunit 7A1, mitochondrial OS=Bos taurus GN=COX7A1 PE=1 SV=2	138.0	[0..1]	[80..1]
gi\|56609206 - gi\|56609206\|gb\|AAW03192.1\| mitochondrial cytochrome c oxidase subunit 7AH [Tarsius syrichta]	135.0	[0..1]	[80..1]
gi\|73948429 - gi\|73948429\|ref\|XP_855440.1\| PREDICTED: similar to Cytochrome c oxidase polypeptide VIIa-heart, mito...	134.0	[0..1]	[80..1]
CX7A1_MOUSE - Cytochrome c oxidase subunit 7A1, mitochondrial OS=Mus musculus GN=Cox7a1 PE=1 SV=1	134.0	[0..1]	[80..1]
CX7A1_PRECR - Cytochrome c oxidase subunit 7A1, mitochondrial OS=Presbytis cristata GN=COX7A1 PE=3 SV=1 CX7A1_TRACR - Cytochrome c oxidase subunit 7A1, mitochondrial OS=Trachypithecus cristatus GN=COX7A1 PE=3 SV=1	131.0	[0..1]	[79..1]
gi\|60655793, gi\|... - gi\|60655793\|gb\|AAX32460.1\| cytochrome c oxidase subunit VIIa polypeptide 1 [synthetic construct], gi... COX7A1 - cytochrome c oxidase subunit VIIa polypeptide 1 (muscle)	130.0	[0..1]	[79..1]
gi\|60652707, gi\|... - gi\|60652709\|gb\|AAX29049.1\| cytochrome c oxidase subunit VIIa polypeptide 1 [synthetic construct], gi...	130.0	[0..1]	[79..1]
gi\|149056362, gi... - gi\|149056362\|gb\|EDM07793.1\| rCG54339, isoform CRA_c [Rattus norvegicus], gi\|109461622\|ref\|XP_0010756...	130.0	[0..1]	[80..1]
CX7A1_SAISC - Cytochrome c oxidase subunit 7A1, mitochondrial OS=Saimiri sciureus GN=COX7A1 PE=3 SV=1	129.0	[0..1]	[80..1]
gi\|94420774, gi\|... - gi\|94420774\|ref\|NP_001035368.1\| cytochrome c oxidase subunit 7AH precursor [Macaca mulatta], gi\|5660...	127.0	[0..1]	[79..1]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRALRVSQAL VRSFSSTARN RLENRVAEKQ KIFQADNDLP VHLKGGATDN ILYRVTMTLC  60
   61 LGGTVYSLYC LGWASFPHKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1occJ
Description:	Mitochondrial cytochrome c oxidase subunit VIIa
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits