YRC Public Data Repository - Protein Structure Prediction

Protein:	COX6A_ONCMY
Organism:	Oncorhynchus mykiss
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX6A_ONCMY.

Description	E-value	Query Range	Subject Range
gi\|171847245, gi... - gi\|89271881\|emb\|CAJ83526.1\| cytochrome c oxidase subunit VIa polypeptide 1 [Xenopus tropicalis], gi\|...	158.0	[0..3]	[102..11]
gi\|182891396, gi... - gi\|68357762\|ref\|XP_698045.1\| PREDICTED: hypothetical protein [Danio rerio], gi\|52219190\|ref\|NP_00100...	157.0	[0..3]	[102..4]
gi\|47217580 - gi\|47217580\|emb\|CAG02507.1\| unnamed protein product [Tetraodon nigroviridis]	156.0	[0..1]	[99..11]
gi\|76638499 - gi\|76638499\|ref\|XP_587918.2\| PREDICTED: similar to cytochrome c oxidase subunit VIa polypeptide 1 pr...	156.0	[0..5]	[100..32]
COX6A1 - cytochrome c oxidase subunit VIa polypeptide 1 gi\|123999658, gi... - gi\|123999658\|gb\|ABM87370.1\| cytochrome c oxidase subunit VIa polypeptide 1 [synthetic construct], gi... gi\|114647282 - gi\|114647282\|ref\|XP_001160455.1\| PREDICTED: similar to 15E1.4 (Cytochrome C Oxidase Polypeptide VIa-...	155.0	[0..5]	[100..16]
gi\|50756677 - gi\|50756677\|ref\|XP_415270.1\| PREDICTED: similar to cytochrome c oxidase subunit VIa [Gallus gallus]	154.0	[0..2]	[100..13]
gi\|148222617, gi... - gi\|71051873\|gb\|AAH99297.1\| MGC116489 protein [Xenopus laevis], gi\|148222617\|ref\|NP_001089622.1\| hypo...	154.0	[0..3]	[102..11]

Back

Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPASMAAR RVLSAASHAG HEGGSARTWK ILSFVLALPG VAVCIANAYM KMQQHSHEPP  60
   61 EFVAYSHLRI RTKKWPWGDG NHSLFHNPHE NALPEGYEGP RH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	1v54G
Description:	Bovine heart cytochrome c oxidase at the fully oxidized state
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits