YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: COX6A_ONCMY
Organism: Oncorhynchus mykiss
Length: 102 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX6A_ONCMY.

Description E-value Query
Range
Subject
Range
gi|171847245, gi... - gi|89271881|emb|CAJ83526.1| cytochrome c oxidase subunit VIa polypeptide 1 [Xenopus tropicalis], gi|...
158.0 [0..3] [102..11]
gi|182891396, gi... - gi|68357762|ref|XP_698045.1| PREDICTED: hypothetical protein [Danio rerio], gi|52219190|ref|NP_00100...
157.0 [0..3] [102..4]
gi|47217580 - gi|47217580|emb|CAG02507.1| unnamed protein product [Tetraodon nigroviridis]
156.0 [0..1] [99..11]
gi|76638499 - gi|76638499|ref|XP_587918.2| PREDICTED: similar to cytochrome c oxidase subunit VIa polypeptide 1 pr...
156.0 [0..5] [100..32]
COX6A1 - cytochrome c oxidase subunit VIa polypeptide 1
gi|123999658, gi... - gi|123999658|gb|ABM87370.1| cytochrome c oxidase subunit VIa polypeptide 1 [synthetic construct], gi...
gi|114647282 - gi|114647282|ref|XP_001160455.1| PREDICTED: similar to 15E1.4 (Cytochrome C Oxidase Polypeptide VIa-...
155.0 [0..5] [100..16]
gi|50756677 - gi|50756677|ref|XP_415270.1| PREDICTED: similar to cytochrome c oxidase subunit VIa [Gallus gallus]
154.0 [0..2] [100..13]
gi|148222617, gi... - gi|71051873|gb|AAH99297.1| MGC116489 protein [Xenopus laevis], gi|148222617|ref|NP_001089622.1| hypo...
154.0 [0..3] [102..11]

Back

Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPASMAAR RVLSAASHAG HEGGSARTWK ILSFVLALPG VAVCIANAYM KMQQHSHEPP  60
   61 EFVAYSHLRI RTKKWPWGDG NHSLFHNPHE NALPEGYEGP RH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.522879
Match: 1v54G
Description: Bovine heart cytochrome c oxidase at the fully oxidized state
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle