YRC Public Data Repository - Protein Structure Prediction

Protein:	COX5B_BOVIN, COX...
Organism:	Bos taurus
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX5B_BOVIN, COX....

Description	E-value	Query Range	Subject Range
COX5B_BOVIN - Cytochrome c oxidase subunit 5B, mitochondrial OS=Bos taurus GN=COX5B PE=1 SV=2	184.0	[0..1]	[98..32]
COX5B_MOUSE - Cytochrome c oxidase subunit 5B, mitochondrial OS=Mus musculus GN=Cox5b PE=1 SV=1	182.0	[0..1]	[98..31]
gi\|73969436 - gi\|73969436\|ref\|XP_531795.2\| PREDICTED: similar to Cytochrome c oxidase polypeptide Vb, mitochondria...	179.0	[0..1]	[98..32]
gi\|55583747 - gb\|AAV53387.1\| mitochondrial cytochrome c oxidase subunit Vb [Sus scrofa] COX5B_PIG - Cytochrome c oxidase subunit 5B, mitochondrial OS=Sus scrofa GN=COX5B PE=2 SV=1	179.0	[0..1]	[98..32]
gi\|109103898 - gi\|109103898\|ref\|XP_001100566.1\| PREDICTED: similar to cytochrome c oxidase subunit Vb precursor [Ma...	178.0	[0..1]	[98..32]
gi\|60824360 - gi\|60824360\|gb\|AAX36677.1\| cytochrome c oxidase subunit Vb [synthetic construct] gi\|49456415 - gi\|49456415\|emb\|CAG46528.1\| COX5B [Homo sapiens]	177.0	[0..1]	[98..32]
gi\|60653103, gi\|... - gi\|60653103\|gb\|AAX29246.1\| cytochrome c oxidase subunit Vb [synthetic construct], gi\|60653101\|gb\|AAX...	177.0	[0..1]	[98..32]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASGGGVPTDE EQATGLEREV MLAARKGQDP YNILAPKATS GTKEDPNLVP SITNKRIVGC  60
   61 ICEEDNSTVI WFWLHKGEAQ RCPSCGTHYK LVPHQLAH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.39794
Match:	1occF
Description:	Cytochrome c oxidase Subunit F
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits