YRC Public Data Repository - Protein Structure Prediction

Protein:	SO1036
Organism:	Shewanella oneidensis
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO1036.

Description	E-value	Query Range	Subject Range
gi\|90413241, gi\|... - gi\|90413241\|ref\|ZP_01221236.1\| cobalamin synthase [Photobacterium profundum 3TCK], gi\|90325793\|gb\|EA...	216.0	[0..8]	[257..26]
COBS_VIBPA - Adenosylcobinamide-GDP ribazoletransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 22... COBS_VIBPA - Cobalamin synthase OS=Vibrio parahaemolyticus GN=cobS PE=3 SV=1	214.0	[0..2]	[260..7]
gi\|46912802, gi\|... - gi\|54308374\|ref\|YP_129394.1\| cobalamin synthase [Photobacterium profundum SS9], gi\|46912802\|emb\|CAG1...	211.0	[0..6]	[257..24]
COBS_SHESM - Adenosylcobinamide-GDP ribazoletransferase OS=Shewanella sp. (strain MR-4) GN=cobS PE=3 SV=1 COBS_SHESA - Adenosylcobinamide-GDP ribazoletransferase OS=Shewanella sp. (strain ANA-3) GN=cobS PE=3 SV=1 COBS_SHESR - Adenosylcobinamide-GDP ribazoletransferase OS=Shewanella sp. (strain MR-7) GN=cobS PE=3 SV=1	210.0	[0..1]	[262..1]
gi\|89073413, gi\|... - gi\|89073413\|ref\|ZP_01159937.1\| cobalamin synthase [Photobacterium sp. SKA34], gi\|89050900\|gb\|EAR5637...	207.0	[0..6]	[259..17]
COBS_SHESW - Adenosylcobinamide-GDP ribazoletransferase OS=Shewanella sp. (strain W3-18-1) GN=cobS PE=3 SV=1 COBS_SHEPC - Adenosylcobinamide-GDP ribazoletransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) ... gi\|124510225, gi... - gi\|124546273\|ref\|ZP_01705378.1\| cobalamin 5'-phosphate synthase [Shewanella putrefaciens 200], gi\|12...	204.0	[0..1]	[262..1]
gi\|151939183, gi... - gi\|75856576\|ref\|ZP_00764202.1\| COG0368: Cobalamin-5-phosphate synthase [Vibrio sp. Ex25], gi\|2542283...	202.0	[0..4]	[256..12]
COBS_SHEB9 - Adenosylcobinamide-GDP ribazoletransferase OS=Shewanella baltica (strain OS195) GN=cobS PE=3 SV=1 gi\|217972187, gi... - gi\|217972187\|ref\|YP_002356938.1\| cobalamin synthase [Shewanella baltica OS223], gi\|217497322\|gb\|ACK4...	202.0	[0..1]	[262..1]
COBS_LEPIC - Adenosylcobinamide-GDP ribazoletransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae s... COBS_LEPIN - Adenosylcobinamide-GDP ribazoletransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae s... COBS_LEPIN - Cobalamin synthase OS=Leptospira interrogans GN=cobS PE=3 SV=1 COBS_LEPIC - Cobalamin synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=co...	202.0	[0..4]	[259..5]
COBS_SHEB5 - Adenosylcobinamide-GDP ribazoletransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=c...	201.0	[0..1]	[262..1]

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Predicted Domain #1

Region A:
Residues: [1-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERESWHKE IDLFFVAMGY FTRIPMPKWV EVDADKLNKA SRYFGLVGLL VGLLSAIIFW  60
   61 LTQNWLPAGV SVLLSMLTGI LLTGGFHEDG LADTFDGFGG GWTAEDKLRI MKDSRLGSYG 120
  121 ALALIMVLLL KWQLLVELAL YDPVVAGSAM IVAHTVSRVV AASLIFTETY VRDDETSKSK 180
  181 PLAQHQGIND LFILIASGVL VLLVLKGIAA LSLLLVMIGL RRLIVVIFRR QIGGYTGDTL 240
  241 GAAQQICEIV CYFVLLVVGG IL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits