YRC Public Data Repository - Protein Structure Prediction

Protein:	COBB_SYNY3
Organism:	Synechocystis sp. PCC 6803
Length:	482 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COBB_SYNY3.

Description	E-value	Query Range	Subject Range
gi\|113898132, gi... - gi\|159898850\|ref\|YP_001545097.1\| cobyrinic acid a,c-diamide synthase [Herpetosiphon aurantiacus ATCC...	317.0	[0..2]	[451..4]
gi\|36786322, gi\|... - gi\|37526889\|ref\|NP_930233.1\| cobyrinic acid a,c-diamide synthase [Photorhabdus luminescens subsp. la...	315.0	[0..2]	[452..8]
gi\|39985042, gi\|... - gi\|39998097\|ref\|NP_954048.1\| cobyrinic acid a,c-diamide synthase [Geobacter sulfurreducens PCA], gi\|...	315.0	[0..2]	[453..3]
gi\|186684182, gi... - gi\|23129907\|ref\|ZP_00111728.1\| COG1797: Cobyrinic acid a,c-diamide synthase [Nostoc punctiforme PCC ...	314.0	[0..1]	[454..1]
gi\|75701714, gi\|... - gi\|75907989\|ref\|YP_322285.1\| cobyrinic acid a,c-diamide synthase [Anabaena variabilis ATCC 29413], g...	313.0	[0..1]	[463..1]
CBIA_BACHD - Cobyrinate a,c-diamide synthase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 ... COBB_BACHD - Cobyrinic acid A,C-diamide synthase OS=Bacillus halodurans GN=cobB PE=3 SV=1	312.0	[0..2]	[457..4]
gi\|76260880, gi\|... - gi\|76260880\|ref\|ZP_00768507.1\| Cobyrinic acid a,c-diamide synthase CbiA [Chloroflexus aurantiacus J-... gi\|222526014, gi... - gi\|222526014\|ref\|YP_002570485.1\| cobyrinic acid a,c-diamide synthase [Chloroflexus sp. Y-400-fl], gi... gi\|53796051 - ref\|ZP_00357068.1\| COG1797: Cobyrinic acid a,c-diamide synthase [Chloroflexus aurantiacus]	309.0	[0..2]	[461..5]
gi\|77975823 - gi\|77975823\|ref\|ZP_00831357.1\| COG1797: Cobyrinic acid a,c-diamide synthase [Yersinia frederiksenii ...	309.0	[0..2]	[451..33]
gi\|213051951 - gi\|213051951\|ref\|ZP_03344829.1\| cobyrinic acid a,c-diamide synthase [Salmonella enterica subsp. ente... gi\|213648240 - gi\|213648240\|ref\|ZP_03378293.1\| cobyrinic acid a,c-diamide synthase [Salmonella enterica subsp. ente... gi\|214001444 - gi\|214001444\|ref\|ZP_03412179.1\| cobyrinic acid a,c-diamide synthase [Salmonella enterica subsp. ente... gi\|16760968 - gi\|16760968\|ref\|NP_456585.1\| cobyrinic acid a,c-diamide synthase [Salmonella enterica subsp. enteric... gi\|16503266, gi\|... - gi\|25315191\|pir\|\|AF0759 cobyrinic acid A,C-diamide synthase [imported] - Salmonella enterica subsp. ... gi\|29141336, gi\|... - gi\|29141336\|ref\|NP_804678.1\| cobyrinic acid a,c-diamide synthase [Salmonella enterica subsp. enteric...	308.0	[0..2]	[452..22]
gi\|62128246, gi\|... - gi\|62180613\|ref\|YP_217030.1\| cobyrinic acid a,c-diamide synthase [Salmonella enterica subsp. enteric...	308.0	[0..2]	[452..7]

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Predicted Domain #1

Region A:
Residues: [1-482]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVIIAGERS GAGKTTITLA MLAYLARQKL RVQSFKVGPD YIDPMFHSQI TGRPCRNLDP  60
   61 FLTSEAYVQR CFHYHSQGTP YSLIEGVMGL FDGVPYQGLT DYSSTAHIAR LLNLPIVFVM 120
  121 DCQRLSGSVA AIVQGYRHWQ PGVNLVGVIL NRVGGDRHLE LLKIALEPLR IPILGVFFRQ 180
  181 QDLTLPDRHL GLVPCGELPQ IQQYFDQLAH VAAQQLDWPK LLPLLETPRN LPSPMSLFDV 240
  241 PQKSPQARLA IAQDQAFNFY YADNLDLLTH CGFELIPFSP LEDTELPPAI DGVYLGGGFP 300
  301 ELFAEQLSQN QALKDQLKTL IHQGLPTYGE CGGLMYLSQS LTNFEGQIFP MLEMLPTAVT 360
  361 MGGKLSLGYR QAQVVNSHSW LWQTESLRGH EFHRSQMTKL PNQALYRQRG LLAIDQNTTD 420
  421 GWCVGSVQAS YLHLHWGSQI STVEKFRAAC LAFQKKLSYL GKHPPFKSVP LRNTGGDAHG 480
  481 RE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.39794
Match:	1s1mA
Description:	Crystal Structure of E. Coli CTP Synthetase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits