YRC Public Data Repository - Protein Structure Prediction

Protein:	SO0413
Organism:	Shewanella oneidensis
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO0413.

Description	E-value	Query Range	Subject Range
gi\|113890537, gi... - gi\|78690768\|ref\|ZP_00855407.1\| Dephospho-CoA kinase [Shewanella sp. MR-7], gi\|78509824\|gb\|EAP23207.1...	190.0	[0..1]	[205..1]
gi\|113968761, gi... - gi\|82497184\|ref\|ZP_00882742.1\| Dephospho-CoA kinase [Shewanella sp. MR-4], gi\|82404773\|gb\|EAP45455.1...	189.0	[0..1]	[205..1]
gi\|160877167, gi... - gi\|160877167\|ref\|YP_001556483.1\| dephospho-CoA kinase [Shewanella baltica OS195], gi\|160862689\|gb\|AB...	187.0	[0..1]	[205..1]
gi\|117918873, gi... - gi\|78686181\|ref\|ZP_00850952.1\| Dephospho-CoA kinase [Shewanella sp. ANA-3], gi\|78506145\|gb\|EAP19667....	187.0	[0..1]	[205..1]
gi\|68543124, gi\|... - gi\|68543124\|ref\|ZP_00582839.1\| Dephospho-CoA kinase [Shewanella baltica OS155], gi\|68519168\|gb\|EAN42...	186.0	[0..1]	[205..1]
COAE_SODGM - Dephospho-CoA kinase OS=Sodalis glossinidius (strain morsitans) GN=coaE PE=3 SV=1	186.0	[0..1]	[205..1]
gi\|120597344, gi... - gi\|82744196\|ref\|ZP_00906783.1\| Dephospho-CoA kinase [Shewanella sp. W3-18-1], gi\|82718451\|gb\|EAP5343...	185.0	[0..1]	[205..1]
gi\|77811175, gi\|... - gi\|77813930\|ref\|ZP_00813201.1\| Dephospho-CoA kinase [Shewanella putrefaciens CN-32], gi\|77811175\|gb\|...	184.0	[0..1]	[205..1]
gi\|78366242, gi\|... - gi\|78366242\|ref\|ZP_00836524.1\| Dephospho-CoA kinase [Shewanella sp. PV-4], gi\|78361830\|gb\|EAP03652.1...	182.0	[0..1]	[200..1]
gi\|88819239, gi\|... - gi\|88859013\|ref\|ZP_01133654.1\| dephospho-CoA kinase [Pseudoalteromonas tunicata D2], gi\|88819239\|gb\|...	181.0	[0..2]	[197..9]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKFVVGLTG GIGSGKTTVA NLFAEEGICL VDADVVAREV VAPGTHGLNA IISHFGTEML  60
   61 TASGELDRAK LRQRVFNDEQ ERQWLNQLLH PMIRQEMLLQ VEKATSDYVI MVVPLLFENG 120
  121 LDRLVHRTLV VDISPELQIS RTVQRDNVDA TQVNNIINSQ CSRSEKLARA DDIIDNHGEI 180
  181 SRLKREVHAL HQRYLQLSGN HNAHD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.221849
Match:	1jjvA
Description:	Dephospho-CoA kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.00104173493322	bayes_pls_golite062009
dephospho-CoA kinase activity	0.656417599253142	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: