YRC Public Data Repository - Protein Structure Prediction

Protein:	COAD_PSEAE
Organism:	Pseudomonas aeruginosa
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COAD_PSEAE.

Description	E-value	Query Range	Subject Range
gi\|71556883, gi\|... - gi\|71736330\|ref\|YP_276889.1\| phosphopantetheine adenylyltransferase [Pseudomonas syringae pv. phaseo...	5.0E-46	[1..159]	[29..187]
COAD_CARHZ - Phosphopantetheine adenylyltransferase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / D...	6.0E-46	[1..159]	[1..159]
tr\|E4RAP8\|E4RAP8... - Phosphopantetheine adenylyltransferase OS=Pseudomonas putida (strain BIRD-1) GN=coaD PE=3 SV=1 COAD_PSEPK - Phosphopantetheine adenylyltransferase OS=Pseudomonas putida (strain KT2440) GN=coaD PE=3 SV=1	2.0E-45	[1..159]	[1..159]
gi\|95108558 - gi\|95108558\|emb\|CAK13252.1\| phosphopantetheine adenylyltransferase [Pseudomonas entomophila L48] COAD_PSEE4 - Phosphopantetheine adenylyltransferase OS=Pseudomonas entomophila (strain L48) GN=coaD PE=3 SV=1	2.0E-45	[1..159]	[1..159]
tr\|F3GGS5\|F3GGS5... - Phosphopantetheine adenylyltransferase OS=Pseudomonas syringae pv. pisi str. 1704B GN=coaD PE=3 SV=1 COAD_PSEU2 - Phosphopantetheine adenylyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=coaD P...	2.0E-45	[1..159]	[1..159]
COAD_PSEP1 - Phosphopantetheine adenylyltransferase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=coaD PE=3 ...	3.0E-45	[1..159]	[1..159]
COAD_PSESM - Phosphopantetheine adenylyltransferase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=coaD PE... COAD_PSESM - Phosphopantetheine adenylyltransferase OS=Pseudomonas syringae pv. tomato GN=coaD PE=3 SV=1 gi\|213927585, gi... - gi\|213967809\|ref\|ZP_03395956.1\| pantetheine-phosphate adenylyltransferase [Pseudomonas syringae pv. ...	5.0E-45	[1..159]	[1..159]
COAD_PSEPF - Phosphopantetheine adenylyltransferase OS=Pseudomonas fluorescens (strain Pf0-1) GN=coaD PE=3 SV=1	1.0E-44	[1..159]	[1..159]
COAD_PSEF5 - Phosphopantetheine adenylyltransferase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=co... COAD_PSEFS - Phosphopantetheine adenylyltransferase OS=Pseudomonas fluorescens (strain SBW25) GN=coaD PE=3 SV=1	2.0E-44	[1..159]	[1..159]
COAD_MARHV - Phosphopantetheine adenylyltransferase OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / D...	3.0E-44	[1..157]	[1..157]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRVLYPGTF DPITKGHGDL IERASRLFDH VIIAVAASPK KNPLFSLEQR VALAQEVTKH  60
   61 LPNVEVVGFS TLLAHFVKEQ KANVFLRGLR AVSDFEYEFQ LANMNRQLAP DVESMFLTPS 120
  121 EKYSFISSTL VREIAALGGD ISKFVHPAVA DALAERFKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	1qjcA
Description:	Phosphopantetheine adenylyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
pantetheine-phosphate adenylyltransferase activity	3.03187936898064	bayes_pls_golite062009
pantoate-beta-alanine ligase activity	2.81193878035427	bayes_pls_golite062009
catalytic activity	2.74718220535323	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	1.62370757945153	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	1.62370757945153	bayes_pls_golite062009
adenylyltransferase activity	1.61625530385033	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	1.61089358601097	bayes_pls_golite062009
ligase activity	1.15322915814026	bayes_pls_golite062009
nicotinate-nucleotide adenylyltransferase activity	0.46461802137308	bayes_pls_golite062009
nicotinamide-nucleotide adenylyltransferase activity	0.21096109874233	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: