YRC Public Data Repository - Protein Structure Prediction

Protein:	COAA_DICDI
Organism:	Dictyostelium discoideum
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COAA_DICDI.

Description	E-value	Query Range	Subject Range
gi\|48374972 - gi\|48374972\|gb\|AAT42170.1\| putative actin depolymerizing factor [Sorghum bicolor]	154.0	[0..2]	[131..330]
gi\|114613080 - gi\|114613080\|ref\|XP_001141822.1\| PREDICTED: similar to src homology 3 domain-containing protein HIP-...	146.0	[0..5]	[145..67]
gi\|47213201 - gi\|47213201\|emb\|CAF95317.1\| unnamed protein product [Tetraodon nigroviridis]	144.0	[0..5]	[146..8]
gi\|171906575, gi... - gi\|171906575\|ref\|NP_001116428.1\| drebrin-like isoform c [Homo sapiens], gi\|14041996\|dbj\|BAB55065.1\| ...	144.0	[0..5]	[145..8]
gi\|76648103 - gi\|76648103\|ref\|XP_882998.1\| PREDICTED: similar to drebrin-like isoform a isoform 4 [Bos taurus]	144.0	[0..5]	[146..8]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVSSTELK AAYDEVLADS NDTNWCLFKY EGKNKIVLSG KGSGGFAELA QEINQPSERL  60
   61 YAYLRVVSGD DESKRSKFVF ISWCGEEVGP LAKANVSVHK ASVKQVIKNI GVEVHYTVAD 120
  121 DLNEEELMTK VRKSSGADYS GNKSTN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	1wnjA
Description:	NMR structure of human coactosin-like protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits